Pairwise Alignments

Query, 313 a.a., NodD3 nod box-dependent transcriptional activator from Sinorhizobium meliloti 1021

Subject, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  116 bits (291), Expect = 6e-31
 Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 13/302 (4%)

Query: 1   MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSSAIARLRSYFQDELFRMQGREL 60
           M     DLNLL   D L+ +++V+ AA  + L+QP +S+A+ARLR    D L    GR +
Sbjct: 7   MNISNFDLNLLRVFDMLLREQNVSRAAERLALTQPTVSNALARLRDQLGDPLLVRVGRRM 66

Query: 61  ITTPRAEALAPAIRDALLHIQFSIISWDMFNPAQSDRCFRIILSDFMTLVFFEKVVERVA 120
             TPRA AL   IR AL  I+ ++ + D F P +S R  RI L+DF+  +    ++ R+ 
Sbjct: 67  RPTPRALALEGPIRAALQQIEQTLGTGDGFEPQRSHRQLRIALTDFVEQLCMPPLLARLE 126

Query: 121 REAPGVSFELLPPDDN-PDELLRRGEVDFLI--FPDV-FMSSVHPKAKLFDQTLVSVGCL 176
             AP V  +++    N P E L RG++D ++  F +V    + HP    + +  + +   
Sbjct: 127 LLAPNVRIDVVHLAPNLPAEALDRGDLDLVLGRFDEVPARFTRHP----WRRETLQIALR 182

Query: 177 TNEQLLGD---LSFERYMSMGHVAAQFGRALKPSVEQWLLLEHGYKRRIELVVPGFNLIP 233
                L     L  + ++ + H+    G+  +  V+QW L E G  R+I    P +    
Sbjct: 183 QQHPHLAPGQALDLDAFLGLRHIWVHGGQT-RGMVDQW-LAEQGLTRQIAYTTPNYLQAA 240

Query: 234 PLLSGTKRIAIIPLRLANHFAKSIPLRIVKHPLPLLSFTEAVQWPALHNKDQASIWMREI 293
            L + T    ++P +LA  FA  +PL + + P  L  F   V   +    D A  W+ E 
Sbjct: 241 HLAAATDMCVVLPRQLAQQFAHLLPLAVHELPFALEPFELEVVHLSHRQHDPALAWLVEQ 300

Query: 294 LL 295
           +L
Sbjct: 301 IL 302