Pairwise Alignments

Query, 336 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 368 a.a., Putrescine-binding periplasmic protein SpuD from Xanthobacter sp. DMC5

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 79/330 (23%), Positives = 124/330 (37%), Gaps = 34/330 (10%)

Query: 1   MNRIFVLAATAATIATAMPATAADLVFTSWGGTTQDAQKIAWAEKFTEKTGINVLQDGPT 60
           M R  + A   AT+     ATA D V   +  +      +   E FT++TGI V  D   
Sbjct: 1   MLRQTLAAVVVATLGLTGVATAQDKVVNVFNWSDYIDPTVL--EDFTKETGIKVRYDVFD 58

Query: 61  DYGKLKAMVEANAVTWDVVDVEGDYAAQAGKKGLLEKLDFSVIDKSKLDPRFVTD----- 115
               L+  + A    +DVV   G +  +  K G+   LD S +   +     VT      
Sbjct: 59  SNEVLETKLLAGKTGYDVVVPSGSFLQRQIKAGVFIPLDKSKLPNLQYAWPEVTQRLAVY 118

Query: 116 -----YSVGSFYYSFVIGCNKDAV-----DACPKTWADLFDAQKFPGMR--AFYKWSAPG 163
                ++V   + +  IG N D V     D    TW  +F  +    ++    Y    P 
Sbjct: 119 DPGNAHAVNYMWGTTGIGYNVDKVKERLGDIPLNTWDIIFKPEILSKLKDCGVYVLDGPE 178

Query: 164 -VIEAALLADGVSPDKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLLASAEAPFGSVW 222
            VI  A+   G+ P+   P D+ +A + L TI+  I  +        L A  +      W
Sbjct: 179 EVIPTAMKYLGLDPNSKNPEDIAKAGELLMTIRPYIKKFDSSGYINAL-ARGDICIALGW 237

Query: 223 NG-------------RMTALAQSGINVETSWEQNITAADALVVPKGSRNKEAAMQFIALA 269
           +G             + T      ++     E  +   D   +PK ++N + A+ FI   
Sbjct: 238 SGDVYQAKTRAQEAAKKTKKKPVNVDYVLPKEGALMWFDNFAIPKDAKNIDNALAFINYM 297

Query: 270 TSPEAQADLAKITGYAPINLDSPKMMDPEL 299
             PE  A  +    YA  NL S K +D E+
Sbjct: 298 MKPEVAAKNSNFISYANGNLASQKFIDKEI 327