Pairwise Alignments

Query, 272 a.a., transposase, fragment from Sinorhizobium meliloti 1021

Subject, 516 a.a., Mobile element protein from Variovorax sp. SCN45

 Score =  214 bits (544), Expect = 4e-60
 Identities = 113/270 (41%), Positives = 158/270 (58%), Gaps = 7/270 (2%)

Query: 1   MPAERLEMRRVREILRYRFEQGLGHKSIAVRVGAAPSTVRETLRRAAIAELSWPLGDDVS 60
           MP  R+ MRR+RE LR   +  L +  I   +  + S   + +  A  A + W +   ++
Sbjct: 1   MPTNRITMRRIRETLRLHLQADLSYNEIGRALKISKSAAGKYVSLARAAGIDWAVAQTLT 60

Query: 61  DAVLEAALYKAAGTKTGHRRSPEPDWTQVHRELKRKHMTLQILWDEYISRYP----EGYR 116
           D  LE+ LY+ A  ++ H+ +P  D+  VH+ELKR  +TLQ+LW+EY+        + Y+
Sbjct: 61  DEELESRLYRPALPRSSHQLAP--DFAIVHQELKRAGVTLQLLWEEYVRSLAGAGQQAYK 118

Query: 117 YSRFCDLYRGWAMKLPVTMRQDHAAGDKLFVDYAGDTVTVVVDRLSGKTRQAHLFVAVLG 176
           Y+ FC  YR WA+ L  +MRQ H AG+KLFVDYAG TV +V D  +G+   A +FVA LG
Sbjct: 119 YTSFCVKYRAWALGLKRSMRQTHIAGEKLFVDYAGQTVPLV-DAATGEITAAQIFVAALG 177

Query: 177 ASSLSYAQARWSETLPDWIECHILALEFFGGAPALLVPDNAKVAIIKACHFDPQVNRTYC 236
           AS+ +YA A   +T  DWI   + ALEFFGG P L+VPD A+  I     +DP+ NR Y 
Sbjct: 178 ASNYTYACATARQTTADWIGAQVRALEFFGGVPRLIVPDQARALIKSPDRYDPEPNRLYD 237

Query: 237 GMAAHYGSAVLPTRPRRPRDKEQTSRCTLL 266
             A HYG A+L  RP  PRDK +     L+
Sbjct: 238 EFATHYGCALLAARPAHPRDKPKVENAVLV 267