Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 311 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  110 bits (276), Expect = 3e-29
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           M    +DLNL +  DA+ TE  LT A + V ++QPA+S A+ARLR  F D LF    + +
Sbjct: 1   MNLSKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALARLRETFNDPLFVRTAQGM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120
           +PTP A+ +   VR+AL  +++SV      NP Q+ + +RI ++D    V    + +RL 
Sbjct: 61  VPTPMAQNIIGPVRNALSLLRVSVQESRIFNPQQAAKTYRISMTDLTEAVILPLLFQRLR 120

Query: 121 REAPGVSFE-LLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNE 179
           R AP V  E  L    +  + L  G +DF V   L         KL  +  VC       
Sbjct: 121 RLAPTVVIESFLSKRRETTKELAAGRLDFAVDAPLNTDPQVRHVKLMEDRYVC-AMRKGH 179

Query: 180 QLLG--ELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLP 237
            L G  +L+ + Y+ + H+     R          L + G +R++ L    + +   +L 
Sbjct: 180 PLAGKDKLTLDDYLGLTHIHIS-SRRNGLGHVDLALGKMGLQRKIALRSQHYLMASQVLQ 238

Query: 238 HTNRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWMREILLQ 296
            T+ +  +P R  +  E      +  + +PP+     + W    ++DP N WMRE +++
Sbjct: 239 QTDMVMTVPERFARRHELHW-FNLPVNDVPPV--ETHLYWHESTDQDPANRWMREQMIE 294