Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 302 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  101 bits (251), Expect = 3e-26
 Identities = 90/313 (28%), Positives = 134/313 (42%), Gaps = 35/313 (11%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +D+NLLV  +ALM E+ LT  A ++ + QPA+SAA+ RLR  F D L    GR + PT
Sbjct: 7   RRVDMNLLVIFEALMFEKNLTRVAEKLFMGQPAVSAALGRLRDLFDDPLLLRNGRGMEPT 66

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREA 123
           PRA A+   ++ A+  I  +V      +P+ S   FRI LSD      F  ++ +L  EA
Sbjct: 67  PRAVAILKELQPAMDTISGAVSRAKDFDPSTSCAVFRIGLSDDAEFGLFPPLLSQLREEA 126

Query: 124 PGVSFELLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNEQ--- 180
           PG+             ++RR +        L MSS     ++          P N +   
Sbjct: 127 PGI-----------IVVVRRANY-------LLMSSLLASGEITVGVSYTTELPANAKRKK 168

Query: 181 --------LLGE-----LSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVP 227
                   L G+     L+ + Y    H    F   L  + +   L   G  RRV L VP
Sbjct: 169 LRDIPCKVLRGDDGAAPLTLDDYCERPHAMVSFSGDLSGNID-LDLARIGRARRVVLAVP 227

Query: 228 GFTLIPPLLPHTNRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGN 287
            F+ +  LL  T  IA +P        +   LR    P        ++ W  +H+ DP  
Sbjct: 228 QFSGLRALLAGTQIIATVPDYAACALTEGTALRAEDPPFAIDAAELSMVWSGVHDNDPAE 287

Query: 288 IWMREILLQEASR 300
            W+R  + +  +R
Sbjct: 288 RWLRARIGEHMAR 300