Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 304 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  114 bits (285), Expect = 3e-30
 Identities = 93/301 (30%), Positives = 139/301 (46%), Gaps = 29/301 (9%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +DLNLL+  + LM ER +T AA ++ L QPA+SAA++RLR  F D LF   GR + P+
Sbjct: 7   RRVDLNLLIVFETLMHERSVTRAAEKLFLGQPAISAALSRLRGLFDDPLFVRTGRSMEPS 66

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREA 123
            RA  +   +  AL  I  +V      +PA S   FRI LSD +      ++++RL  EA
Sbjct: 67  ARAVEIFALLSPALDSISTAVSRAAEFDPATSTAVFRIGLSDDVEFALLPQLLKRLRAEA 126

Query: 124 PGVSFELLPLDDDPYELLRRGDVDFLVLPDLFMSS-------------AHPKAKLFAEAL 170
           PG+             ++RR  V+++++P L  S              A+ K K+   +L
Sbjct: 127 PGIVL-----------VVRR--VNYILMPGLLASGEISIGVSYTADLPANAKRKVLRRSL 173

Query: 171 VCVGCPTNEQLLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFT 230
             +     + + G LS + + +  H    F   L   F    L +   KR V L VP F 
Sbjct: 174 PKL--LRADSVPGSLSLDDFCARPHALVSFAGDLS-GFIDEELEKLDRKRHVVLAVPQFN 230

Query: 231 LIPPLLPHTNRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWM 290
            +  LL  T+ +A +P    +       LR    PLP   F   + W    + DPG  W+
Sbjct: 231 GLGTLLAGTDILATVPDYAAEALTSAGGLRAEDPPLPVRSFELHMAWRGSQDNDPGERWL 290

Query: 291 R 291
           R
Sbjct: 291 R 291