Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 308 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  134 bits (336), Expect = 4e-36
 Identities = 97/290 (33%), Positives = 147/290 (50%), Gaps = 8/290 (2%)

Query: 4   RGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPT 63
           R +DLNLLV LDAL++E+ +T AA R+ LSQPA+S A+ARLR   GD L   QG  L+PT
Sbjct: 11  RRIDLNLLVILDALLSEQHVTRAAERLHLSQPAVSHALARLRDLLGDPLLVRQGGSLVPT 70

Query: 64  PRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREA 123
            RA  LAP + +AL  +Q +++A +  +PA + RRFR+ +SD+   +F   +V  L REA
Sbjct: 71  ARALELAPPLTEALGQVQ-ALLAPNRFDPASAKRRFRVAMSDYSAAIFLPDLVRTLRREA 129

Query: 124 PGVSFELLPLD-DDPYELLRRGDVDFL--VLPDLFMSSAHPKAKLFAEALVCVGCPTNEQ 180
           PG+  +++    +   + +  GD+D    V PD  M +      LF E   C+    +  
Sbjct: 130 PGIDLQIIQASREGMVDGVLNGDLDLAAGVFPD--MPAELRTTPLFEEHYTCLVDRDSLP 187

Query: 181 LLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLPHTN 240
             G L    Y+S  HV  +   +  P  E+ L      +R V + +P + + P L+  T+
Sbjct: 188 ASGTLDLPTYLSRPHVLLEMRGSGTPEIERALTTIRE-RRHVAISLPHWGVAPQLIQGTD 246

Query: 241 RIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWM 290
            I  +  R +   +    L  V  P     F   + W A    D G  W+
Sbjct: 247 LILTVSSRGLLNIDHQ-HLLAVPAPFHIPSFAFELAWHARRGGDSGLQWL 295