Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 298 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  119 bits (297), Expect = 1e-31
 Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 11/296 (3%)

Query: 6   LDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGRELIPTPR 65
           LDL  L   D +     ++ AA R+ ++Q A S A+ +LR +F D LF+   + + PTP 
Sbjct: 4   LDLEWLAVFDEVYKTGNVSKAAERLGMAQAAASTALNKLRAHFDDRLFTRTAQGMQPTPH 63

Query: 66  AEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLAREAPG 125
           AE + P +R+AL  +  +       +PAQ+ RRFRI ++D   +V    +++ L   APG
Sbjct: 64  AERIYPNLREALAQLAQAQGNRSSFDPAQAQRRFRICMTDISEVVLLPGLLDHLRHAAPG 123

Query: 126 VSFELLPLDDDPYELLRRGDVDFLV--LPDLFMSSAHPKAKLFAEALVCVGCPTNEQLLG 183
           V  E   +       L+ G+VD  V  +P L   +   +  LF +  VC+    + ++  
Sbjct: 124 VHIETEIISTLSGRRLQDGEVDLAVGFMPQL--DAGFYQQTLFMQNFVCLAAQNHPRIGA 181

Query: 184 ELSFEKYMSMGHVAAQ---FGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLPHTN 240
            L+ +++ +  H        G A+  +     L   G KR V + +  F  +  ++ HT 
Sbjct: 182 RLTRKRFEAEAHAVVSTSGTGHAIVDT----TLARLGLKRNVVVRLSSFLSVARIVAHTE 237

Query: 241 RIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWMREILLQ 296
            + ++P  L +      P+++++ P     +     W    + DPGN W+R  L Q
Sbjct: 238 LLVVVPRILGRVLATQEPVKLLEPPFALPDYAVKQHWHERFHADPGNAWLRRTLAQ 293