Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 326 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

 Score =  113 bits (283), Expect = 5e-30
 Identities = 96/315 (30%), Positives = 146/315 (46%), Gaps = 21/315 (6%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           + FR LDLNLL   D +M ER LT AAR + ++QPA+S A+ RLR   GDEL    G  +
Sbjct: 3   VNFRTLDLNLLRVFDEVMAERNLTRAARNLSITQPAVSNALRRLREVLGDELVRRSGAGV 62

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120
            PTPRA AL P VRDAL  +Q   +A    + A +D  F + ++D         +V+   
Sbjct: 63  EPTPRALALWPTVRDALRQLQ-HTLAPGEFDAATADTTFLLAMADATAAELIPGLVQIAE 121

Query: 121 REAPGVSFELLPLDD-DPYELLRRGDVDFLV--LPDLFMS----------SAHPKAKLFA 167
           +EAP +S  +LPL   DP  +L   +VD  V   P +  S           A    +L+ 
Sbjct: 122 KEAPAISLRVLPLTTRDPRRMLELEEVDMAVGYFPAVIASLAARGQSGVGVAFETQRLYL 181

Query: 168 EALVCVGCPTNEQLLGELSFEKYMSMGHVAAQF-GRALKPSFEQWLLLEHGFKRRVELVV 226
              VCV    +      L+ + Y +  H+   F GR     F    L   G +RR+ + V
Sbjct: 182 GQYVCVMRRGHPLANAPLTLDDYCAARHLLVSFSGRPY--GFIDQTLGAMGRERRIVVTV 239

Query: 227 PGFTLIPPLLPHTNRIAIIPLRLVKY--FEQTIPLRIVKHPLPPLWFTEAVQWPALHNKD 284
             F     ++ +++ + ++P   V        + LR +    PP+   +A+ W       
Sbjct: 240 NQFFTAGRVVANSDLLTVLPRHFVTVTGIGDQLVLRDLPFDQPPV-HVDAI-WHRRAQHG 297

Query: 285 PGNIWMREILLQEAS 299
             + W+R  LL+ A+
Sbjct: 298 HSHEWLRTALLRSAA 312