Pairwise Alignments

Query, 310 a.a., NodD2 nod box-dependent transcription activator from Sinorhizobium meliloti 1021

Subject, 308 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

 Score =  118 bits (295), Expect = 2e-31
 Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 6/311 (1%)

Query: 1   MRFRGLDLNLLVALDALMTERKLTAAARRVKLSQPAMSAAIARLRTYFGDELFSMQGREL 60
           M    +DLNL +  DA+ TE  LT A + V ++QPA+S A++RLR  F D LF    + +
Sbjct: 1   MNLSKVDLNLFIVFDAIYTEANLTRAGQIVGITQPAVSNALSRLRETFNDPLFVRTAQGM 60

Query: 61  IPTPRAEALAPAVRDALLHIQLSVIAWDPINPAQSDRRFRIILSDFMTLVFFERVVERLA 120
           +PTP A+ +   VR+AL  ++ SV      NP Q+++ FRI ++D    V    + +RL 
Sbjct: 61  VPTPMAQNIIGPVRNALALLRTSVQESRTFNPQQANKTFRISMTDLTEAVILPPLFQRLR 120

Query: 121 REAPGVSFE-LLPLDDDPYELLRRGDVDFLVLPDLFMSSAHPKAKLFAEALVCVGCPTNE 179
           R AP V  E  L    +  + L  G +DF +   L         KL  +  VC     + 
Sbjct: 121 RLAPAVMIESFLCKRRETTKELAAGRLDFAIDAPLNTDPQVRHIKLMQDRYVCALRQGHP 180

Query: 180 QLLGELSFEKYMSMGHVAAQFGRALKPSFEQWLLLEHGFKRRVELVVPGFTLIPPLLPHT 239
               +L+ + Y+ M H+     R     +    L + G +R+V L    + +   +L  T
Sbjct: 181 LADSKLTLDSYLGMTHIHIS-SRRNGLGYVDLALGKMGVQRKVALRSQHYLMASQVLQQT 239

Query: 240 NRIAIIPLRLVKYFEQTIPLRIVKHPLPPLWFTEAVQWPALHNKDPGNIWMREILLQEAS 299
           +    +P R    F +   LR    P+        + W    ++DP N WMRE + +   
Sbjct: 240 DMAMTVPER----FARRHQLRYQALPVEVPALETHLYWHESTDQDPANRWMREQITELCE 295

Query: 300 RSEFQGETSLE 310
           R   + E +LE
Sbjct: 296 RVVAEEEKALE 306