Pairwise Alignments

Query, 276 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 288 a.a., ABC transporter for L-Fucose, permease component 2 (from data) from Sinorhizobium meliloti 1021

 Score =  159 bits (403), Expect = 5e-44
 Identities = 83/279 (29%), Positives = 156/279 (55%), Gaps = 6/279 (2%)

Query: 3   RTTLQTLSLYAGLAVVCGVLLFPIYWLFVTALSTLAEIRQLPPSFWPA----EPQWSTFA 58
           R  L  ++  AGL +   V+  P  W+ +++L    EI   PP + P     +   + F+
Sbjct: 10  RRRLLKVAHLAGLFLAMLVICLPGLWIVLSSLRPTVEIMAKPPVWIPETLSLDAYRAMFS 69

Query: 59  KVGTER-PIFLWLWNSTLAALGSVALSMVVSVFAGYSLSRFSVKGGRSLGLFILTAKMLP 117
             G    P++ +  NS + ++ S  +++ + +  GY+ +R+  K   ++ L  +  + +P
Sbjct: 70  GAGQGGVPVWDYFRNSLIVSVTSTVIALAIGLSGGYAFARYRFKAKSAIFLGFMLTRAVP 129

Query: 118 ATLLVIPLFGIFRSMGLIGSLWSLVLAHATLIIPFTTWMLKGYFDTIPRELEQAAMVDGC 177
              L +PLF ++   G+I + +SL+L +  L +PFT W++ G+F  +P++L +AA +DGC
Sbjct: 130 GIALSLPLFMLYARTGIIDTHFSLILTYVALNVPFTIWLIDGFFRQVPKDLAEAAQIDGC 189

Query: 178 SPLGALFRVVLPVATPGLAATALYAFVLSWADYAYARTFLTNAQGSWTANLGITTMKGEY 237
           +P  A ++V  P+A PG+A+  ++AF+ SW +YA A + +T +  S T  +G+     E+
Sbjct: 190 TPWQAFWQVEFPLAGPGIASAGIFAFLTSWNEYALA-SQITRSVNSKTLPVGLLDYTAEF 248

Query: 238 VTDWNEISAAAVFIALPIILIYLFLERYLVGGLTAGAEK 276
             DW  + A AV + +P + +   ++++LV GLT GA K
Sbjct: 249 TIDWRGMCALAVVMIVPALTLTFIIQKHLVSGLTFGAVK 287