Pairwise Alignments

Query, 601 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 526 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  103 bits (257), Expect = 2e-26
 Identities = 132/562 (23%), Positives = 217/562 (38%), Gaps = 72/562 (12%)

Query: 56  PLLKVFGATLAPGAWSAWSDVLASNLSRNLFWLPLANTMILGAGVATGCVLVGGFLAWLV 115
           P+L +F   L  G+   W  +LA+ L R  F      T IL    A      G   AWLV
Sbjct: 2   PILAIFWLALT-GSTEGWQHLLANVLPRAGF-----RTFILLGLTAATTAFFGIVCAWLV 55

Query: 116 VMTDVPFRRTIGLLATLPFMIPSFATALAWGSLFR-----NARVGGQIGFLEGLGFSVPD 170
              + P RR +     LP  IPS+  A A+G          + V    G+     +  PD
Sbjct: 56  TTFEFPLRRILSAALVLPLAIPSYLAAYAFGEFLDFTGPVQSAVRAAFGYHSIRDYWFPD 115

Query: 171 WLAWGMVPTLVVLMAHYYSLAFTVIAAALATVNSDLVEAAQMTGAGRRRIFLGIVLPVAL 230
             + G    ++VL +  Y   +    AAL+       EAA+  GA    +F  + LP+A 
Sbjct: 116 IRSLG--GAVIVLSSVLYPYVYLSARAALSMQGRFAAEAARTLGAKPLNVFFSVQLPMAR 173

Query: 231 PALVAGASLTFAGAVSNFAAPALLGLPVRMQTLATRLY--GMIEIGQAERGYVLAILLIL 288
           PA+  G SL     +++  A   LG    +QTL   +Y   +     A    + A++LI+
Sbjct: 174 PAIAIGLSLVLMETLNDIGAVEYLG----VQTLTFTIYETWLNRGNLANATQIAAVILII 229

Query: 289 VSAFFLWAGNRVISGRRSYATITGKGGRSKRFALGTARLPLFVAAASICVLTTV----VP 344
           VSA  +   N     R      T    R +  AL   R      A+  C L       +P
Sbjct: 230 VSALIVIERNAREKQRFGAPKATSMAQRHRLKALAGWRR---WCASLFCFLPVASGFFIP 286

Query: 345 VVILIASSLAPSSSALFSDWSLHYWIGASDPAIARGQAGIWNNPLILSATGVTVGLGVTV 404
           V++L     A    ALF                          P +L A    +G  + V
Sbjct: 287 VIVL-GGYAAKRLDALF-------------------------QPKLLKA----LGHSLEV 316

Query: 405 AFSASLVGLLVAFVLA------RSRSGFLSAAINQISF--------LPLLVPGIAFGAAY 450
           + SA+ + L+ AFV +      RSR   ++A +  + +        + +L+P  +     
Sbjct: 317 SLSAAFLTLIAAFVFSYAIRTERSRLSKVAARLGSMGYGVPGTVLAIGVLIPLASLDNGV 376

Query: 451 VALLGAPIGPLPALY--GTFLLLVIAATAYLVPFAVQTGRAVIQQVSGDLDESARMTGAG 508
              + +  G    L   GT   ++ A     +  A  T  A   ++S  +D ++R  G  
Sbjct: 377 DGFIRSHFGFSSGLLLSGTAFAIIYAHAVRFMTMAEGTLDAGFHKLSPHIDMASRSLGRN 436

Query: 509 FLRRLFAITVPLAIRGLSAGALIVFVKIVRDLSLVVLLFTPTMPLLSVLAYRYASDGFTQ 568
             + LF + +P          L+V ++ +++L   +LL       L+ L Y  AS    Q
Sbjct: 437 RAQTLFKVLLPNMRPAALTAFLLVLIESMKELPATILLRPFGFNTLATLVYEDASRSRVQ 496

Query: 569 FANALTVVVLVISVAATLFANR 590
            A    +++++  +   L  ++
Sbjct: 497 DAAVPAIIIIMAGLIPVLLVSK 518