Pairwise Alignments

Query, 265 a.a., ABC transporter periplasmic substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 267 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  152 bits (383), Expect = 9e-42
 Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 2/263 (0%)

Query: 1   MTMRLKSLLLPLVGLLAITVGAATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPD 60
           ++ R  +L +  V +LA T GAA A  ++LD+++  K + I V    PP+G  ++ M+P 
Sbjct: 6   LSKRQFALAMVSVAMLAAT-GAAQAQ-NALDNVLKAKTIKIAVPTDYPPYGSVDKNMKPQ 63

Query: 61  GLDVDVAKLLAKDLGVELELVPVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPY 120
           GLDV++A+L+A  LGV++ELVPVT  +RIP LQT K D V+++ G   ER   + F++ Y
Sbjct: 64  GLDVEMAELIAAKLGVKVELVPVTSANRIPYLQTRKADLVISTLGKNPEREKVIDFTSAY 123

Query: 121 GGHRSIIIAPKEATIKSLADLAGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNA 180
                 + A K   + S AD+AGK V V RG   ++ L+      ++  RF+D++ T+ A
Sbjct: 124 APFFQAVYAAKSMKLTSFADMAGKTVAVTRGAMEDQELNKVAPPNVDYRRFEDNNATIAA 183

Query: 181 LVSGQVDAIGTVNYIAAQLQERYPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFV 240
            V+GQ   I T   +A  +  + P    E K     S   VG+ + +  L   +N ++  
Sbjct: 184 FVAGQTQTIATSAAVAGDMLSKNPKVSAEFKLLLKDSPCFVGVAKGETALKTKVNEIIAA 243

Query: 241 HKQSGELGAIYEKWMKTPIPELP 263
            K+ G L A+ +KW+     +LP
Sbjct: 244 AKKDGTLDAMSKKWLGKAAGDLP 266