Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  206 bits (525), Expect = 5e-58
 Identities = 122/333 (36%), Positives = 178/333 (53%), Gaps = 23/333 (6%)

Query: 26  FITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDDSLL 85
           FI RR  + IP    I+   FALI + PGDPV  ++G R  DP   A    R  L+  L 
Sbjct: 4   FIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLY 63

Query: 86  VQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGALAAF 145
            QY  ++ ++ +GDLG S+    SV +        T+ LS+ +      LG+L G +AA 
Sbjct: 64  AQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVIAAL 123

Query: 146 RRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGA---------GTGFL- 195
           +RG+  D  V+  S+ G S P F  G+  +  F V L W P  G           TGF+ 
Sbjct: 124 KRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTGFML 183

Query: 196 ---------DRAW----HLALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVS 242
                    D  W    HL LPA+ L    +A++ ++TR++++E L  DY+  A+A+G+S
Sbjct: 184 IDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLS 243

Query: 243 SRRILLAYVLRNSLIPVITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTI 302
             R++  + LRN+LIPV+T  GL V  +LAGA+  E  FS PG+G  +I+A+  RD P +
Sbjct: 244 PARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPVV 303

Query: 303 QGITLLFSAFVVLVNLAVDVIYTLIDPRIRFGR 335
           Q   LL +  V+LVN  VD++Y   +PRIR  R
Sbjct: 304 QNGILLIACLVILVNFVVDILYGFANPRIRHQR 336