Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  208 bits (530), Expect = 1e-58
 Identities = 117/312 (37%), Positives = 174/312 (55%), Gaps = 4/312 (1%)

Query: 23  LVVFITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDD 82
           +  ++ RR A+TIP LL++S  VF L+ + PGDPV  +LG  A DPA LA +R +  LD 
Sbjct: 1   MFAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEGA-DPAQLALMRHQMGLDQ 59

Query: 83  SLLVQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGAL 142
            L VQY  WL   + GDLGVS     +V   I +R  V+  + L++  L   + +  G +
Sbjct: 60  PLPVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGLV 119

Query: 143 AAFRRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFG---AGTGFLDRAW 199
           AA+R+    D  ++  +   +S P+F  G+  L  FG  L W P  G       F     
Sbjct: 120 AAWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVGYVPMSENFSQGVL 179

Query: 200 HLALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYVLRNSLIPV 259
           ++ LP   L      ++ +++RA+ IE L  +YVT ARA+GV   ++L  +VL N+  P 
Sbjct: 180 YVILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRHVLPNAFNPT 239

Query: 260 ITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSAFVVLVNLA 319
           +T  GLI+  +L+G   +E  F+LPGLG LMID++  RD P +QG  L  +   V++NL 
Sbjct: 240 LTMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTACIYVVINLV 299

Query: 320 VDVIYTLIDPRI 331
           VD+ Y L DPR+
Sbjct: 300 VDLCYPLFDPRV 311