Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  216 bits (549), Expect = 9e-61
 Identities = 125/330 (37%), Positives = 181/330 (54%), Gaps = 23/330 (6%)

Query: 26  FITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDDSLL 85
           FI  R ++ +P  + ++   F LI + PGDP+ ++ G R  DPA  A +R  Y  D  ++
Sbjct: 4   FILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDKPVI 63

Query: 86  VQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGALAAF 145
           VQYG ++ +V+ GDLG SI+   +V S        T+ L++ +    L LG+  G LAA 
Sbjct: 64  VQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGILAAV 123

Query: 146 RRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGA---------GTGFL- 195
           RR +  D  V+  S+ G S P F  G+  +  F V L W P  G           TGFL 
Sbjct: 124 RRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETGFLL 183

Query: 196 -------------DRAWHLALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVS 242
                            HL LPA+ L    +A++ ++TR+A++E L  DY+  ARA+G+S
Sbjct: 184 IDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAKGLS 243

Query: 243 SRRILLAYVLRNSLIPVITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTI 302
             R++  + LRN+LIPV+T  GL V  +  GAI  E  FS PG+G  +I+A+ +RD P +
Sbjct: 244 RLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDYPVL 303

Query: 303 QGITLLFSAFVVLVNLAVDVIYTLIDPRIR 332
           QG  LL    V+LVNL VDV Y +I+PRIR
Sbjct: 304 QGGMLLLGGIVMLVNLLVDVAYGVINPRIR 333