Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  198 bits (504), Expect = 1e-55
 Identities = 117/314 (37%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 30  RFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARAS-DPATLAAIRARYHLDDSLLVQY 88
           R    + L+L +    F L+H APGDPV ++ GA     P  +A +R +Y LD SL VQ 
Sbjct: 13  RLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLDKSLPVQL 72

Query: 89  GTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGALAAFRRG 148
             +L +V +GDLG S   N  VT  I +RL  T+ L L S  L    G  LG L++ +  
Sbjct: 73  AVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSRKPN 132

Query: 149 TGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFG------AGTG----FLDRA 198
             L + + + S+ G ++P F  GI  + +   +    P  G       G G     LD A
Sbjct: 133 GWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRSIDSTGAGGFADMLDVA 192

Query: 199 WHLALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYVLRNSLIP 258
            HL LP L L+   +A   ++ R+++++ L  D++  ARA+G++ R +L  + LRN+L+P
Sbjct: 193 QHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYKHALRNALLP 252

Query: 259 VITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSAFVVLVNL 318
           V+T  GL    +LAGAI VE  F+ PGLG L  ++V +RD PTI G+ L  S  VV++N 
Sbjct: 253 VVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFSSIVVVVMNQ 312

Query: 319 AVDVIYTLIDPRIR 332
             D+ Y  IDPRI+
Sbjct: 313 LTDLCYRFIDPRIK 326