Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  213 bits (543), Expect = 4e-60
 Identities = 117/326 (35%), Positives = 182/326 (55%), Gaps = 13/326 (3%)

Query: 23  LVVFITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDD 82
           ++ F+ RR    + +++ ++F  F L     GDPV  LLG  A  P  +  +RA   LD 
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQDAK-PDQIRELRAALGLDQ 58

Query: 83  SLLVQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGAL 142
              VQ+  +L    +G+ G+S+     V+  I +R   T+ L+L++  L L +GI +G  
Sbjct: 59  PFFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVY 118

Query: 143 AAFRRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGAGTGFLDRAW--- 199
            A RRGT + +  +  S+ G+S P F+ GI  + VF V L WFP+FG G       W   
Sbjct: 119 TALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWTSG 178

Query: 200 --------HLALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYV 251
                   H+ LPA+ LA   + +++++ RA ++E L  DY+ FARARG+S+R I   + 
Sbjct: 179 LFSVDGWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHFGHA 238

Query: 252 LRNSLIPVITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSA 311
           L+N+L+PV+T  GL + G++A AI  E  F  PG+G L I AV   DIP +     L + 
Sbjct: 239 LKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCLIAL 298

Query: 312 FVVLVNLAVDVIYTLIDPRIRFGRVG 337
             V++NL VD++Y ++DPR+R G+ G
Sbjct: 299 IFVVINLVVDLLYFVVDPRLRVGKAG 324