Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 308 a.a., ABC transporter, membrane spanning protein (agrocinopine) from Agrobacterium fabrum C58

 Score =  191 bits (485), Expect = 2e-53
 Identities = 106/316 (33%), Positives = 179/316 (56%), Gaps = 9/316 (2%)

Query: 23  LVVFITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDD 82
           ++ FI  R    I ++++    VF ++ +  GDP  ++LG  A+ P  LAA R  + LD 
Sbjct: 1   MISFILARLVRAIIVMMLTVTFVFIILRLG-GDPARAMLGENAT-PEALAAFRTAWGLDR 58

Query: 83  SLLVQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGAL 142
           S+  Q+  +L+  +RGD GVS    R V + I++R+  T+ L++ +  L + +GI  G +
Sbjct: 59  SIPEQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGII 118

Query: 143 AAFRRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGAGTGFLDRAW-HL 201
           AA RR +  D++V+  +V G S P F+ G+  ++VF V     P+ G+ T      W H 
Sbjct: 119 AAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSST------WQHA 172

Query: 202 ALPALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYVLRNSLIPVIT 261
            LP         A + +  R+A+IE L + Y+  ARA G+    +++ + L N+ IP++T
Sbjct: 173 ILPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWEVVIRHALPNAAIPMVT 232

Query: 262 AAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSAFVVLVNLAVD 321
             G +  G+L G+  VE  F+ PGLG+  + A+   D+  +Q + LLF+AF+V +NL VD
Sbjct: 233 MLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAMILLFTAFMVTINLIVD 292

Query: 322 VIYTLIDPRIRFGRVG 337
           V+Y +++P+IR  + G
Sbjct: 293 VLYAVLNPKIRLQKNG 308