Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  198 bits (503), Expect = 2e-55
 Identities = 119/324 (36%), Positives = 178/324 (54%), Gaps = 13/324 (4%)

Query: 23  LVVFITRRFAVTIPLLLIISFGVFALIHIAPGDPVSSLLGARASDPATLAAIRARYHLDD 82
           ++VFI +R    + ++L ++   F +  +A GDPV  ++G + S     AA+R R  L+D
Sbjct: 1   MLVFIIKRLGNAVLVMLSVALIAFLIFRLA-GDPVELMVGEQTSQEDR-AALRERLGLND 58

Query: 83  SLLVQYGTWLSQVIRGDLGVSILGNRSVTSTIADRLGVTIFLSLMSTTLVLGLGILLGAL 142
           SL  QY  ++    +G+ GVS    + V   IA+R   T+ L L++T + L +G+ LG L
Sbjct: 59  SLPTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVL 118

Query: 143 AAFRRGTGLDRTVVMFSVFGISSPAFVTGIFFLYVFGVLLHWFPTFGAG---------TG 193
            A RRG      +   S+ G+S P+FV GI  + VF V L W P FG G         TG
Sbjct: 119 TAIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTG 178

Query: 194 FLDRAWHLAL--PALALAASTMAIVVKITRAAVIEELARDYVTFARARGVSSRRILLAYV 251
            L  +   AL  PA+AL+   + +V+++ RA ++E L  D+V FARARG+   RI   + 
Sbjct: 179 LLTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHA 238

Query: 252 LRNSLIPVITAAGLIVIGILAGAIYVEVTFSLPGLGALMIDAVQKRDIPTIQGITLLFSA 311
           LRN L+PV+T   + V  ++A A+  E  F  PG+G L I AV   DIP +     + S 
Sbjct: 239 LRNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISF 298

Query: 312 FVVLVNLAVDVIYTLIDPRIRFGR 335
             V++N  VD+ Y +IDPR+R  R
Sbjct: 299 IFVVLNTFVDIAYAVIDPRLRTAR 322