Pairwise Alignments

Query, 400 a.a., TRm3 transposase from Sinorhizobium meliloti 1021

Subject, 402 a.a., IS256 family transposase from Erwinia tracheiphila SCR3

 Score =  353 bits (906), Expect = e-102
 Identities = 178/371 (47%), Positives = 246/371 (66%), Gaps = 6/371 (1%)

Query: 30  LKKALSERILNAELDDHLDVERLEGGP---ANRRNGSSKKTVLTGTSKMTLTIPRDRAGT 86
           L K   E  LNAEL DHL  E+    P    N RNG S KT+L    ++ L  PRDR  T
Sbjct: 30  LTKLTVETALNAELTDHLGHEK--NAPKTGTNTRNGYSSKTLLCDDGEIGLNTPRDRENT 87

Query: 87  FDPKLIARYQRRFPDFDDKIISMYARGMTVREIQGHLEELYGIDVSPDLISAVTDTVLEA 146
           F+P+LI + Q R    D +I+S+YA+GMT REI    +E+Y  DVSP LIS VTD V E 
Sbjct: 88  FEPQLIKKNQTRIAQMDSQILSLYAKGMTTREIVDTFKEMYDADVSPALISKVTDAVKEQ 147

Query: 147 VGEWQNRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYVALAVLADGSKEILGLWIEQTEG 206
           V EWQNR L+  YP+V+ D I VK+R  G V NKAV++A  +  +G KE+ G+W+ + EG
Sbjct: 148 VAEWQNRQLDALYPIVYMDCIVVKVRQNGSVINKAVFLAPGINTEGRKELPGMWLAENEG 207

Query: 207 AKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSY 266
           AKFWL V+ ELKNRG QDILIA VDGLKGFP+AI +V+ QT +Q CI+H++R+ L++V++
Sbjct: 208 AKFWLNVLTELKNRGLQDILIACVDGLKGFPDAINSVYLQTHIQLCIIHIVRNRLKYVAW 267

Query: 267 KDRRTVVPALRAIYRARDAEAGLKALEAFEEGYWGQKYPAIAQSWRRNWEHVVPFFAFPE 326
           KD + V   L+ +Y+A    A   AL AF E  W  KYP I++SWR + E++  FF +P 
Sbjct: 268 KDYKAVTGGLKTVYQAPTEAAARMALAAFAE-EWDDKYPQISKSWRAHGENLNTFFGYPS 326

Query: 327 GVRRIIYTTNAIEALNSKLRRAVRSRGHFPGDEAAMKLLYLVLNNAAEQWKRAPREWVEA 386
            +R+ IYTTNAIE+LNS +R A++ R  FP D++  K++YL + +A+++W    + W  A
Sbjct: 327 DIRKAIYTTNAIESLNSVIRAAIKKRKVFPTDDSVRKVIYLAIQSASKKWSMPVQNWRLA 386

Query: 387 KTQFAVIFGER 397
            ++F + FG+R
Sbjct: 387 MSRFIIEFGDR 397