Pairwise Alignments

Query, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

Subject, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

 Score = 59.7 bits (143), Expect = 8e-14
 Identities = 60/276 (21%), Positives = 116/276 (42%), Gaps = 24/276 (8%)

Query: 2   KTVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILR 61
           +  C+ +   R  I  R+         RPP  + EL   ++ +  +   +GYRR+  +LR
Sbjct: 23  RRACQIISADRKMIRYRSC--------RPP--EVELRLRLRDLANERRRFGYRRLFILLR 72

Query: 62  RNARKLGRSWPNAKRVYRVMKLHNLLLVRHTGAVDDRLHEGQVAVE-RSNIRWCSDGFEI 120
           R+    G       R+YR+ +   L + +             + VE ++N RW  D    
Sbjct: 73  RDGEPSG-----VNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHD 127

Query: 121 GCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEPIEW 180
                 + RV   +D   RE +A +  T     +  ++L  TA+  R G+  ++      
Sbjct: 128 QFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVAREL--TALIPRRGKPGVI------ 179

Query: 181 LTDNGSCFVARDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDAET 240
           ++DNG+   +    +  +D  ++        P  NG  E+F    + + ++ +     + 
Sbjct: 180 VSDNGTELTSNAILAWSKDHKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDH 239

Query: 241 VMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT 276
             + +  W + YN+  PHS+LGYQ+P  +  + + T
Sbjct: 240 ARSAIAEWADDYNHFRPHSSLGYQTPAAYAGTIAAT 275