Pairwise Alignments

Query, 268 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 323 a.a., Ku domain protein from Variovorax sp. SCN45

 Score =  127 bits (319), Expect = 3e-34
 Identities = 73/273 (26%), Positives = 147/273 (53%), Gaps = 22/273 (8%)

Query: 2   ALRPYWKGYLKLSLVTCPVQMMPATSESEKVRFHTLNRQTQNRVVSHYVDSVTGKEVKEE 61
           A R  WKG +   LV  PV +  AT++   + F  L+++T + V    ++  TGKE+  E
Sbjct: 9   APRVLWKGAISFGLVHIPVALYSATTD-HGIDFDWLDKRTMDPVGYKRINKKTGKEIARE 67

Query: 62  DEVKGYQRGEHEYVILEDEELENVALESTKTIDISTFTPRDSIEWIWLDTPYCLSPNDPV 121
             VKG +  + EYV+L D+E+     ++T+TI+I TF P D I +++L+ PY ++P +  
Sbjct: 68  QIVKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINR- 126

Query: 122 GQEAFSVIRDAMEAQNMVGISRLVISRRERAVMLEPRGKGIVLWTLRYGDEVR------- 174
           G + ++++R+ ++    VG++R+VI  ++   +L P G G+VL  LR+G ++R       
Sbjct: 127 GAKVYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRPWTDLPL 186

Query: 175 -DEDSYFEAIGDEQADSEMMPLVQQLIKKQTKDWTPKMVADPVQERLLEIIAAKKKA--- 230
             ED+    + + +     + + ++L+   + DW P    D  ++ +L ++  K KA   
Sbjct: 187 PSEDAKKAGLSERE-----LKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQT 241

Query: 231 ---LKPQKAQGKTAPSSSPSNVVSIMDALRKSV 260
               +P+  + ++      + ++ + + L++S+
Sbjct: 242 ETVTQPEPEESQSTEGRG-AKIIDLTELLQRSL 273