Pairwise Alignments

Query, 346 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 818 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  202 bits (513), Expect = 3e-56
 Identities = 141/357 (39%), Positives = 194/357 (54%), Gaps = 23/357 (6%)

Query: 3   RRAKPLLQDDSVAKSKPARPRDPAQPNLPFDPMAERIEPCLALLKPVPP------KGPD- 55
           RR + L++    A  KP +    A          ERIEP LA    +PP      K P+ 
Sbjct: 181 RRIEELVEKPK-APPKPVKLNPGALAGAVKAAQPERIEPQLATQTILPPEAEKDSKKPER 239

Query: 56  WVFEVKWDGYRLAIHIEPKGVRIITRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLD 115
           W+ E+K+DGYR   H+    VR++TRGG DWT R+  + E   +L     I+DGE VVLD
Sbjct: 240 WLHEIKFDGYRTMAHVADGKVRLVTRGGLDWTKRYGDLPEVFRRLPCRDVIIDGEIVVLD 299

Query: 116 EEGRSDFGALQRSLGGRGGKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGP 175
           E G S F  LQ +L    G       VF+AFDLL+ +G +L    L  R+ LL+  L G 
Sbjct: 300 ETGVSRFALLQDALSTGAG----NSLVFYAFDLLHLNGWNLFDVPLEKRKALLKQLLAGQ 355

Query: 176 T---GAIQSSEEVFGDG-ALLEKACSMGLKGIIAKHRDWPYRSGRTGDWLKIKCLQSESF 231
                AIQ S+ V G+G AL ++A  MGL+GI++K    PYRSGR+  W K K L++E F
Sbjct: 356 VSSRSAIQFSDHVLGEGRALYDRASEMGLEGIVSKRISAPYRSGRSKTWTKTKALKAEDF 415

Query: 232 MIVGYEQSLTARGGLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEYLRKTLDRLKTSKP-A 290
           +IVGY  S  A  G+ SL L      +  Y G VGTGF   DA+ L++ L RL+  +  A
Sbjct: 416 VIVGYTVSEAAE-GIASLALGEWADGELEYRGKVGTGF---DAQMLKELLARLEPLRAGA 471

Query: 291 VPLKG--KNLVFAQPTLIAEIEFRGWTHDGSLRHASYKGLREVQDNAAVFDMSERAI 345
             L+G  + +++ +P L A I +   T D  LRHA +KGLR+V+ +  V    +R I
Sbjct: 472 AKLEGAPREIIWVRPLLRAHIHYGNRTTDNVLRHAVFKGLRDVELSTPVSMSRKRLI 528