Pairwise Alignments

Query, 346 a.a., ATP-dependent DNA ligase from Sinorhizobium meliloti 1021

Subject, 350 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  390 bits (1001), Expect = e-113
 Identities = 200/343 (58%), Positives = 250/343 (72%), Gaps = 9/343 (2%)

Query: 4   RAKPLLQD-DSVAKSKPARPRDPAQPNLPFDPMAERIEPCLALLKPVPPKGPDWVFEVKW 62
           R+KPLL+D ++  +SKP R R+PAQP L F+PM +R+EP L  LK  PP+G  W +E+KW
Sbjct: 6   RSKPLLRDTEAPIRSKPRRKRNPAQPQLLFNPMPDRVEPALEQLKAHPPQGDQWSWELKW 65

Query: 63  DGYRLAIHIEPKGVRIITRGGHDWTHRFPAIAEATSKLGVGTAILDGEAVVLDEEGRSDF 122
           DGYRLA+HIEP GVRI+TRGGHDWTHRFPAIAEA   LG  T I+DGEAVVLD+EGR DF
Sbjct: 66  DGYRLAVHIEPTGVRILTRGGHDWTHRFPAIAEAARALGPATMIIDGEAVVLDDEGRPDF 125

Query: 123 GALQRSLGGRG---GKRSSTESVFFAFDLLYFDGHDLSGTELSVRRHLLEGFLDGPTGAI 179
           G LQ+SLG  G   G R+S +++ +AFDL+Y DGHDL   E   RRHLLE  +    GAI
Sbjct: 126 GLLQKSLGASGKAAGNRAS-DAILYAFDLMYLDGHDLREMEYRSRRHLLEDTIKANDGAI 184

Query: 180 QSSEEVFGD-GALLEKACSMGLKGIIAKHRDWPYRSGRTGDWLKIKCLQSESFMIVGYEQ 238
           + SE +  D   LLE   S+GL+GI+ KH D PYRSGR GDW+K+KC++SE+FM+VGYE 
Sbjct: 185 RLSETLDADPNVLLEHIRSLGLEGIVGKHLDQPYRSGRAGDWVKVKCIESEAFMVVGYEP 244

Query: 239 SLTARGGLGSLLLAGRKGHDWIYVGSVGTGFNTKDAEYLRKTLDRL--KTSKPAVPLKGK 296
           S+ +  G  SL++A  +G + I+VG+VGTGF   +   LRK LD+L  K   P VP   K
Sbjct: 245 SMASPAGFASLVVAAYRGDELIHVGNVGTGFKEAEMIGLRKMLDKLRWKRKPPPVPFTEK 304

Query: 297 -NLVFAQPTLIAEIEFRGWTHDGSLRHASYKGLREVQDNAAVF 338
            ++V+ +PTLIAEIEFR WT DG LRHASYKGLRE QDNA V+
Sbjct: 305 TDIVWVEPTLIAEIEFRAWTADGKLRHASYKGLRERQDNADVY 347