Pairwise Alignments

Query, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  347 bits (890), Expect = 1e-99
 Identities = 215/518 (41%), Positives = 278/518 (53%), Gaps = 58/518 (11%)

Query: 1   MADNLSKDRAKRDFKKTREPSGEAQVKPSNRRR-----FVIQKHDATRLHYDLRLELDGV 55
           M+  LS+   KRDF  T EP+G A   P+ +R+     FVIQKHDA  LHYD RLELDGV
Sbjct: 1   MSKPLSEYNRKRDFGITAEPAGSA---PAGKRKASALSFVIQKHDARNLHYDFRLELDGV 57

Query: 56  FKSWAVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGR 115
             SWAV KGPSLDPS KRLAV VEDHPL YG FEG++P GQYG G V++WDRG W+P   
Sbjct: 58  LLSWAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDE 117

Query: 116 KSPEEALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAI 175
             P +A   G  KFTL G++L G + LVR R    G K   WLLIK +D  +   +   I
Sbjct: 118 --PRKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKE-QWLLIKEKDPQARSADDYDI 174

Query: 176 LEENATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDV 235
           ++    SV S  S+                                       K   R  
Sbjct: 175 VQAQPNSVLSDASVG--------------------------------------KPKTRAK 196

Query: 236 ATSTAADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWT 295
           A  TA  LP+   PQL   + R P  D W +EIKFDGYR+  RI  G+V L TR G DWT
Sbjct: 197 ARKTA--LPEQFTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDWT 253

Query: 296 AKYPEIADA--ASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFD 353
              P    A  A +L D  +DGE+ +L+ +G PDF ALQ A   G++ ++VY+ FD  F 
Sbjct: 254 ECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFL 313

Query: 354 GGEDLRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQM 413
            GED R   + ER+  L++ LA GS    +RY + F +    +  SAC L+LEG++ K++
Sbjct: 314 NGEDRRQAPVEERRAALKEALA-GSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRL 372

Query: 414 DAPYQSGRTDTWAKSKCRAGHEVVIGGYATTNGK---FRSLLVGVHRGDHFVYVGRVGTG 470
            +PY S R+  W K KCR   E VI GY    G    F +LL+ V+     VY GRVGTG
Sbjct: 373 GSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGTG 432

Query: 471 FGAAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWL 508
           F  A ++  + +L  LE   SP     +  + + V W+
Sbjct: 433 FDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWV 470