Pairwise Alignments

Query, 556 a.a., hypothetical protein from Sinorhizobium meliloti 1021

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  340 bits (871), Expect = 2e-97
 Identities = 205/516 (39%), Positives = 271/516 (52%), Gaps = 41/516 (7%)

Query: 1   MADNLSKDRAKRDFKKTREPSGEAQV-KPSNRRRFVIQKHDATRLHYDLRLELDGVFKSW 59
           MA  L +   KRDF  T EPSG+ +  K ++  +F IQKHDA+ LHYD RLELDG  KSW
Sbjct: 1   MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW 60

Query: 60  AVTKGPSLDPSDKRLAVEVEDHPLDYGDFEGTVPKGQYGGGTVMLWDRGYWEPEGRKSPE 119
           A+ KGPSLDP  +RLAV VEDHPLDY DFEG +P+G YG G V++WDRG WEPEG     
Sbjct: 61  AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEG--DAH 118

Query: 120 EALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDYSVDENGAAILEEN 179
           EA  KG  +F L G++L G + L R       GK+  W+L+K  D  +  E   +I+E  
Sbjct: 119 EAYAKGKLRFRLLGEKLGGVWNLFRTHL---AGKKEQWMLVKSHDAQACSETEYSIVEAL 175

Query: 180 ATSVASGRSMEQIAEGTGRKPRPFMMANADVEADAVWDSKHGLAAEERKKGSRRDVATST 239
             SV S R++        +   P                          + SR+      
Sbjct: 176 PDSVLSERTLVPCKSAAKKATAP--------------------------RSSRKRADKVQ 209

Query: 240 AADLPDFIEPQLCETLARPPASDDWLHEIKFDGYRIQMRIADGKVTLKTRKGLDWTAKYP 299
           AA LP  ++PQL  TL   P S DW +E+KFDGYRI  RI    + L TR G DW++K P
Sbjct: 210 AAPLPAQLQPQLA-TLVDSPPSGDWRYEVKFDGYRILARIEGQDIRLFTRNGHDWSSKMP 268

Query: 300 EIADA--ASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGNLVYFAFDLLFDGGED 357
               A  A  +    +DGE+   D+NG  DF ALQ A        + Y+ FDL F GG+D
Sbjct: 269 RQVAALRALGIDSAWLDGEMVVADENGMADFQALQNAFDTEHDERITYYLFDLPFLGGQD 328

Query: 358 LRSMRLVERKKRLEDFLAAGSDDPRIRYVDHFESGGDAVLRSACKLSLEGIVSKQMDAPY 417
           LR + L  R+  L   L     D  I+Y   F+    ++L SAC+L LEG++ K++D+ Y
Sbjct: 329 LRQLPLQNRRNTLRQLLEHNHCDV-IKYSADFDEPVQSLLDSACRLKLEGLIGKRVDSVY 387

Query: 418 QSGRTDTWAKSKCRAGHEVVIGGYATTNGK---FRSLLVGVHRGD--HFVYVGRVGTGFG 472
              R+  W K KC+   E VI GY    G    F +LL+ +H  D     Y G+VGTGF 
Sbjct: 388 SGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFGALLLALHDNDSGQLRYAGKVGTGFN 447

Query: 473 AAKVERFFPKLKALEASKSPFTGIGAPKKEKEVTWL 508
           A  +     +LK LE ++       A  + + V WL
Sbjct: 448 ATTLASIHARLKPLEIARPALPSPPAGAEARGVHWL 483