Pairwise Alignments

Query, 266 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

 Score =  110 bits (275), Expect = 3e-29
 Identities = 68/243 (27%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 12  WAFVTTALL---MLSAPTVVVLGASFTAGNIITFPPDGLSLKWYGAIAQASDLRQAFVRS 68
           W  VT+ +L    L  P ++++  SF A  ++T    G S +WY ++ +   L  A   +
Sbjct: 7   WFNVTSIVLGFAFLYIPIILLVIYSFNASRLVTVWA-GFSTQWYWSLLENEQLIDAAWVT 65

Query: 69  LIVATICTLVSIPVGTLAGIALAKYRVRFARSIQIYLLL-PFTIPLIGSGIGMMLVLGNM 127
           L +A   +LV+  +GT+A +AL +Y     R++   ++  P  +P + +G+ ++L+   +
Sbjct: 66  LRIAFFSSLVATVLGTMAALALTRYGRFGGRTLFSGMIYAPLVMPEVITGLSLLLLFVAV 125

Query: 128 GVLGKLWPVGIACAVINLPFMIWAVTASASNLSPDLELAAANCGAPPLQRFLYITLPAVL 187
                 W V +A     + F+   V +        LE AA + G PP Q F  ITLP +L
Sbjct: 126 NFDRGFWTVLLAHITFTMCFVAVVVQSRLVTFDRTLEEAALDLGCPPFQTFFKITLPLIL 185

Query: 188 PGVITGSLLMFILALNEFLVSLLLVDARSVTLPVQIYNSIRSIITPDLAAISVVFIACAG 247
           P V++G +L F L+L++ +++       + TLP++IY+ +R  +TP++ A+  + IA   
Sbjct: 186 PAVVSGFMLAFTLSLDDLVIASFTTGPGATTLPMRIYSQVRLGVTPEINAVCTILIAIVT 245

Query: 248 LAI 250
           + +
Sbjct: 246 VVV 248