Pairwise Alignments

Query, 508 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  141 bits (356), Expect = 5e-38
 Identities = 143/505 (28%), Positives = 220/505 (43%), Gaps = 56/505 (11%)

Query: 5   LLKGTALAVTMAACSFGATVAFAQEGCVRVLGYESDGEKQTMDPAALIGTDSVYHIRAVY 64
           LL  TA+A    AC  GA  A       + L Y S+G  +   P       S      VY
Sbjct: 16  LLAPTAIAALTLAC--GAVSA-------KTLVYCSEGSPENFYPGMNTTGTSFDVTTQVY 66

Query: 65  EPLVD--RSNTMQPVPALAESWESNADATEWTFHLRKGVKFHDGS-------DFDAKDVV 115
             +V+  R  T + VP LAE W+ +AD T +TFHLRKGVK+H  S       DF+A D +
Sbjct: 67  NTIVEFERGGT-KVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFI 125

Query: 116 YSYRRL---LDPAVSPGGFSTLAFLD------ADGITAIDDHTVRFKVKEPVVELPMLI- 165
           +   R     DP       +   F D         +  IDD+TV+  + +P  E P L  
Sbjct: 126 FMLERQWKESDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQP--EAPFLAN 183

Query: 166 ---------ATKYALMVPEGAKSEDLRVKGNGTGPFMQETFTINGAVRVMRRNPTYWRAG 216
                    + +YA+ + +    E +     GTGPF    +  +  +R  +  P YW  G
Sbjct: 184 LAMQYAGIQSKEYAIAMLKAGTPEKVDQDPIGTGPFYLVQYQKDAVIR-FKAFPQYW-GG 241

Query: 217 LPKSECLEITTSLEPTSRLSALLSGTVDLSLTVDPASLITLKDNPAVELAATPGATSLYI 276
             K + L    + + + R + L  G   +    +PA L  ++ +P V++   PG    Y+
Sbjct: 242 KAKIDDLVFAITPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYL 301

Query: 277 AVWTDTPPFDSVKVREAMKLVMDRQKILDTVLLGYGEVGADTPIPPSS-PFGLGTPAKTA 335
           +  T   PFD V+VR+A+ + ++++ I+D V L  G V A  PIPP+   +         
Sbjct: 302 SYNTTKKPFDDVRVRKAINMAINKKAIIDGVYLTTG-VAAKNPIPPTMWSYNDAVKDDPY 360

Query: 336 DIEKATALLAEAGHPDGIDFDLYTSDSYPGMMLLAQVYAQMAAPAGIRVNVITSPAEGYW 395
           D E A  LLA+AG+PDG   DL+           A+  A++      ++NV        W
Sbjct: 361 DPEAAKKLLAQAGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEW 420

Query: 396 DTIWLKKPA------VISYT--SARPPAEALTL----SLNSKSEWNETHWTRDDFDALVV 443
                +  A      ++ +T  +  P     TL    S  S S  N + +    ++ LVV
Sbjct: 421 GEYRKRLQAGEHQMGMLGWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVV 480

Query: 444 KAGQTADEKQRNDLYRDAQRIVADE 468
           KA  T  +  R+ LY+ AQ I  ++
Sbjct: 481 KAKSTVKQADRDALYKKAQVIFKEQ 505