Pairwise Alignments

Query, 508 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  144 bits (364), Expect = 6e-39
 Identities = 141/536 (26%), Positives = 232/536 (43%), Gaps = 56/536 (10%)

Query: 1   MKRHLLKGTALAVTMAACSFGATVAFAQEGCVRVLGYESDGEKQTMDPAALIGTDSVYHI 60
           M R  +K   L + + A   G     A +  V       +G        A+    S    
Sbjct: 9   MHRAFMKSRPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASA--- 65

Query: 61  RAVYEPLVD-RSNTMQPVPALAESWESNADATEWTFHLRKGVKFHDGS------DFDAKD 113
             V+  LVD +  T +  PALAE W+ +AD   +TFHLR+GVKFH         D +A D
Sbjct: 66  ETVFNRLVDFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADD 125

Query: 114 VVYSYRRLLDP--------AVSPGGFSTLAFLD-ADGITAIDDHTVRFKVKEPVVELPML 164
           V++S  R LDP        +V    F ++ F +    ++  D+HTV   +  P  E P L
Sbjct: 126 VLWSLNRQLDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRP--EAPFL 183

Query: 165 ----------IATKYALMVPEGAKSEDLRVKGNGTGPFMQETFTINGAVRVMRRNPTYWR 214
                      + +Y   + +  K+ +L  K  GTGPF+ + +  +  VR  + NP Y+R
Sbjct: 184 RDMAMGFTSIYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVR-FKPNPDYFR 242

Query: 215 AGLPKSECLEITTSLEPTSRLSALLSGTVDLSLTVDPASLITLKDNPAVELAATPGATSL 274
            G P ++ L    +++   RL  L +    ++L   P  + ++K +P +++       + 
Sbjct: 243 -GKPPADALVFAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTG 301

Query: 275 YIAVWTDTPPFDSVKVREAMKLVMDRQKILDTVLLGYGE--VGADTPIPPSSPFGLGTPA 332
           YIA+ T     + V+VR+A+ +  DRQ  +D  L G G   VG + P PP+   G  T  
Sbjct: 302 YIAMNTQHKYLNDVRVRKAINMAFDRQTHVDQ-LFGKGNALVGVN-PYPPTM-IGYNTHN 358

Query: 333 KT--ADIEKATALLAEAGHPDGIDFDLYTSD----SYPGMMLLAQVYAQMAAPAGIRVNV 386
           +    D++KA ALL++AG P+G    L+T +    + P   L A++        G+++++
Sbjct: 359 QNPPRDLDKARALLSQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDI 418

Query: 387 ITSPAEGYWDTIWLKKPAVISYTSA------RPPAEALTLSLNS---KSEWNETHWTRDD 437
                  + + +   K       S         P   L+  L+    KS  N   W    
Sbjct: 419 RVME---WAEMLRRAKNGEADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPK 475

Query: 438 FDALVVKAGQTADEKQRNDLYRDAQRIVADEGGMILPVFSSVVAGLRKGCSGYEPN 493
           F  L+ +A +  D  +R  LY +A ++  DE   I      +   +R    GY  N
Sbjct: 476 FQELISRAREVIDNDERARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVIN 531