Pairwise Alignments

Query, 508 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 543 a.a., oligopeptide ABC transporter periplasmic binding protein from Escherichia coli BL21

 Score =  145 bits (366), Expect = 4e-39
 Identities = 150/538 (27%), Positives = 231/538 (42%), Gaps = 61/538 (11%)

Query: 2   KRHLLKGTALAVTMA-----ACSFGATVAFAQEGCVRVLGYESDGEKQTMDPAALIGTDS 56
           KR L+    LA  MA     A    A V  A++   + L   +  E Q++DP  + G   
Sbjct: 6   KRSLVAAGVLAALMAGNVALAADVPAGVTLAEK---QTLVRNNGSEVQSLDPHKIEGVPE 62

Query: 57  VYHIRAVYEPLVDRSNTMQPVPALAESWESNADATEWTFHLRKGVKFHDGSDFDAKDVVY 116
               R ++E L+       P P +AESW+ N DA  WTFHLRK  K+ DG+   A+D VY
Sbjct: 63  SNISRDLFEGLLVSDLDGHPAPGVAESWD-NKDAKVWTFHLRKDAKWSDGTPVTAQDFVY 121

Query: 117 SYRRLLDPAVSPGGFSTLAF---------------LDADGITAIDDHTVRFKVKEPVVEL 161
           S++R +DP  +    S L +               +   G+ AIDDHT+   + EPV   
Sbjct: 122 SWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDLGVKAIDDHTLEVTLSEPVPYF 181

Query: 162 PMLIATKYALMVPEGA---KSEDLRVKGN--GTGPFMQETFTINGAVRVMRRNPTYWRAG 216
             L+       VP+ A     E     GN    G +  + + +N  + V+ R+PTYW   
Sbjct: 182 YKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERI-VLERSPTYWNNA 240

Query: 217 LPKSECLEITTSLEPTSRLSALLSGTVDLSLTVDPASLI-TLKDNPAVELAATPGATSLY 275
                 +         + ++   SG +D++    P  L   LK     E+   P   + Y
Sbjct: 241 KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYY 300

Query: 276 IAVWTDTPPFDSVKVREAMKLVMDRQKILDTVLLGYGEVGADTPIPP-------SSPFGL 328
             +    PPF+ V+VR A+KL MDR  I++ V    G++ A    PP       + P   
Sbjct: 301 YEINNQKPPFNDVRVRTALKLGMDRDIIVNKV-KAQGDMPAYGYTPPYTDGAKLTQPEWF 359

Query: 329 GTPAKTADIEKATALLAEAGH----PDGIDFDLYTSDSYPGMMLLAQVYAQMAAPAGIRV 384
           G   +  + E+A  LLAEAG+    P  I+    TSD +  + + A   +      G+ V
Sbjct: 360 GWSQEKRN-EEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAAS--SLWKKNIGVNV 416

Query: 385 NVITSPAEGYWDTIWLKKPAVISYTSA------RPPAEALTLSLNSKSEWNETHWTRDDF 438
            ++    + + DT   +         A        P   L   L S S  N  H+    F
Sbjct: 417 KLVNQEWKTFLDT---RHQGTFDVARAGWCADYNEPTSFLNTML-SNSSMNTAHYKSPAF 472

Query: 439 DALVVKAGQTADEKQRNDLYRDAQRIVADEGGMILPVFSSVVAGLRK----GCSGYEP 492
           D+++ +  +  DE QR  LY  A++ + D+   I+PV+  V A L K    G +G +P
Sbjct: 473 DSIMAETLKVTDEAQRTALYTKAEQQL-DKDSAIVPVYYYVNARLVKPWVGGYTGKDP 529