Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  167 bits (424), Expect = 2e-46
 Identities = 102/336 (30%), Positives = 167/336 (49%), Gaps = 29/336 (8%)

Query: 7   LASRILFSVLTLLLVSVLIFLILEALPGDVATRILGR-----DATAKALELLRSQLDLDQ 61
           +A R+   + T   +++L F ++  +PGD    ++G      +  A+A+E    +L L++
Sbjct: 5   IARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAME----RLGLNK 60

Query: 62  PALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPAII 121
           P   +Y  ++G   +GDLG S+ T   +          TL LS+ A     +L L+  +I
Sbjct: 61  PLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVI 120

Query: 122 QATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALATIS---------- 171
            A  RG   D+ +  I+L   S+P F    IL+  F+V++   P    I           
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTG 180

Query: 172 ----------EASTWQETLRAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELK 221
                     E   + + L  ++LPA+ L  +      R+ R S++EVLR DY+R A+ K
Sbjct: 181 FMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAK 240

Query: 222 GLRPTAVLFRHALPNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDI 281
           GL P  V+F H L NA++P L V  L  G L+ G V+ E +FS+PG G  LI+A+  RD 
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 282 PLIKATVMISAVVYVAANLVADVLAVLLQPRLRTSR 317
           P+++  +++ A + +  N V D+L     PR+R  R
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR 336