Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  188 bits (477), Expect = 2e-52
 Identities = 108/321 (33%), Positives = 178/321 (55%), Gaps = 8/321 (2%)

Query: 2   SVLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRD--ATAKALELLRSQLDL 59
           S  R L      +V T++ V +L F++++ +PGD A  +      ATA+++  LR+   L
Sbjct: 5   SASRTLVRTAWQAVPTVIGVILLNFILMQLIPGDAADVVAAESGSATAESMAQLRTHFGL 64

Query: 60  DQPALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPA 119
           D P + + F +L +     LG+S     P+  ++G R+ NTLLL + A A  L + +   
Sbjct: 65  DLPVIQQLFAYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAG 124

Query: 120 IIQATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALATISEASTWQ-- 177
            + AT  G+  D  +SV+ L+L S P F L  + + LF+V +  LP   + S  + +   
Sbjct: 125 TVMATRVGRWQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGYTGW 184

Query: 178 ----ETLRAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELKGLRPTAVLFRHA 233
               +  R +VLPA+ +A        R+ R +++EV R D+VR AE KGL P  V  RH 
Sbjct: 185 THVVDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHPWTVNLRHI 244

Query: 234 LPNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDIPLIKATVMISAV 293
           L NA++P   V  ++FG L+GG V+VE VFS+PG G L  D++  RD  ++   +++S++
Sbjct: 245 LRNALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLLGVLLMSSL 304

Query: 294 VYVAANLVADVLAVLLQPRLR 314
           + + AN++ D+L   L PR++
Sbjct: 305 LVIVANMLVDLLHAWLDPRIQ 325