Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  210 bits (534), Expect = 4e-59
 Identities = 114/313 (36%), Positives = 182/313 (58%)

Query: 2   SVLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRDATAKALELLRSQLDLDQ 61
           S+ R +ASR    ++ L +V+VL+F++  A  GD  + +LG  ATA  +  ++ +  LD+
Sbjct: 4   SLFRYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDK 63

Query: 62  PALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPAII 121
           P  V++  WL + L+G+LG SI   RP+T  L  R   T LL+L A AI  ++ +   I+
Sbjct: 64  PLPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIV 123

Query: 122 QATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALATISEASTWQETLR 181
            A  RG+ VD + + I ++  S+P F L  +L+ +FAV+    P     +  + + E L 
Sbjct: 124 SAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAERLH 183

Query: 182 AMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELKGLRPTAVLFRHALPNAIVPA 241
           ++VLPA  L ++ +   IR  R S+++VL  DYVR A  KGL  + V+ +HAL NA+VP 
Sbjct: 184 SLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNALVPI 243

Query: 242 LNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDIPLIKATVMISAVVYVAANLV 301
           + V  L    +IGG VI E VF  PG G L++ A+  RD P+I+  +++ A +YV  N  
Sbjct: 244 VTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLINFS 303

Query: 302 ADVLAVLLQPRLR 314
            D+L  ++ PR++
Sbjct: 304 IDLLYAVVDPRVK 316