Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  191 bits (486), Expect = 2e-53
 Identities = 106/327 (32%), Positives = 182/327 (55%), Gaps = 17/327 (5%)

Query: 3   VLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRDATAKALELLRSQLDLDQP 62
           ++  +  R++ +V+ ++ V+ + FL+ + + GD    +LG+DA    +  LR+ L LDQP
Sbjct: 1   MIAFVLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQDAKPDQIRELRAALGLDQP 59

Query: 63  ALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPAIIQ 122
             V+++ +L +  +G+ G+S+  G  ++ ++G R   TL L+L A  + L + +   +  
Sbjct: 60  FFVQFWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVYT 119

Query: 123 ATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALAT------------I 170
           A  RG  +      ++L+ +SLP FL+  +L+ +FAV +   P+               +
Sbjct: 120 ALRRGTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWTSGL 179

Query: 171 SEASTWQETLRAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELKGLRPTAVLF 230
                WQ     +VLPAVTLAI      +R++R  ++EVLR+DY++ A  +GL   A+ F
Sbjct: 180 FSVDGWQH----IVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARARGLSNRAIHF 235

Query: 231 RHALPNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDIPLIKATVMI 290
            HAL N +VP + +T L  G LI   +I E VF +PG G L I A+   DIP++ A + +
Sbjct: 236 GHALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADIPVMAAYLCL 295

Query: 291 SAVVYVAANLVADVLAVLLQPRLRTSR 317
            A+++V  NLV D+L  ++ PRLR  +
Sbjct: 296 IALIFVVINLVVDLLYFVVDPRLRVGK 322