Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 323 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  254 bits (649), Expect = 2e-72
 Identities = 132/311 (42%), Positives = 200/311 (64%)

Query: 3   VLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRDATAKALELLRSQLDLDQP 62
           + R++A R+   + TLL +S+LIFL +  LPGD+A ++LG+ AT + +   R +L LDQP
Sbjct: 9   IQRMVAVRLGLGLFTLLFISLLIFLAVGLLPGDIAQQVLGQSATPETVAAFRRELGLDQP 68

Query: 63  ALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPAIIQ 122
              RY  W+G  L GD G S+A GRP+ ++L  R+ NTL L+ +A AI + LA++  ++ 
Sbjct: 69  LSWRYLTWIGGILTGDFGHSLANGRPVAELLSARLGNTLFLAAYAAAIAIPLAVLLGLLA 128

Query: 123 ATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALATISEASTWQETLRA 182
           A  RG   D +I+V+TL  +S P+F +A IL+F  +V +   P++A    A    + LR 
Sbjct: 129 AMWRGTWFDRVINVMTLSAISFPEFFVAYILMFWLSVHMGWFPSVADPGAAPDLFDMLRR 188

Query: 183 MVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELKGLRPTAVLFRHALPNAIVPAL 242
             LPA+TL +++  + +R+ R +++ VL   YV +A LKG     ++ RHALPNA+ P  
Sbjct: 189 AFLPAITLVLVVTAHMMRMTRAAVLNVLAEPYVIMARLKGASRWRIITRHALPNALAPIS 248

Query: 243 NVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDIPLIKATVMISAVVYVAANLVA 302
           NV A+N  +LI GVVIVE VF YPG G L++D++  RD+P+++A  +I A VY+  NL+A
Sbjct: 249 NVIAINVAWLITGVVIVEVVFVYPGLGQLMVDSVTNRDMPVVQACALIFAAVYILLNLLA 308

Query: 303 DVLAVLLQPRL 313
           DVLA+   PRL
Sbjct: 309 DVLAIATNPRL 319