Pairwise Alignments

Query, 317 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 322 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  176 bits (446), Expect = 7e-49
 Identities = 102/323 (31%), Positives = 177/323 (54%), Gaps = 9/323 (2%)

Query: 3   VLRLLASRILFSVLTLLLVSVLIFLILEALPGDVATRILGRDATAKALELLRSQLDLDQP 62
           +L  +  R+  +VL +L V+++ FLI   L GD    ++G   + +    LR +L L+  
Sbjct: 1   MLVFIIKRLGNAVLVMLSVALIAFLIFR-LAGDPVELMVGEQTSQEDRAALRERLGLNDS 59

Query: 63  ALVRYFQWLGDFLRGDLGVSIATGRPITDVLGPRIVNTLLLSLFAFAIYLVLALVPAIIQ 122
              +Y +++ D  +G+ GVS   G+ +  ++  R   TL L L A  I LV+ L   ++ 
Sbjct: 60  LPTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVLT 119

Query: 123 ATNRGKAVDNIISVITLVLLSLPDFLLATILLFLFAVAVPILPALAT--ISEASTWQETL 180
           A  RGK     +  +++V +SLP F++  +L+ +F+V++   PA     + +   W   L
Sbjct: 120 AIRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTGL 179

Query: 181 ------RAMVLPAVTLAIMMAVYAIRVLRDSLIEVLRSDYVRLAELKGLRPTAVLFRHAL 234
                  A++LPA+ L++      +R++R  ++EVLRSD+V+ A  +G+    + FRHAL
Sbjct: 180 LTSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHAL 239

Query: 235 PNAIVPALNVTALNFGFLIGGVVIVERVFSYPGFGTLLIDALQLRDIPLIKATVMISAVV 294
            N ++P + +T +N G LI   +I E VF +PG G L I A+   DIP++ A + I + +
Sbjct: 240 RNCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFI 299

Query: 295 YVAANLVADVLAVLLQPRLRTSR 317
           +V  N   D+   ++ PRLRT+R
Sbjct: 300 FVVLNTFVDIAYAVIDPRLRTAR 322