Pairwise Alignments

Query, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  233 bits (594), Expect = 1e-65
 Identities = 132/316 (41%), Positives = 187/316 (59%), Gaps = 6/316 (1%)

Query: 4   LIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGY-GTINS 62
           L++V++L + +  P+G    V  +SF+IA GE   +VGESGCGKS  A  LL    +  +
Sbjct: 6   LLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLLRSPPA 65

Query: 63  LVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHKA 122
            +    V F+GT+LL L   ++  +RGNRIA + Q+P ++L+P   V  QI E +  H  
Sbjct: 66  EISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESLKRHTG 125

Query: 123 LPDGMTMERRIVELFTLVGLPDVGHR---YPHELSGGQQQRVTIAMAVACNPDLLVLDEP 179
           L  G  + RR VEL  LV +P+   R   YPH  SGG +QRV IA+A+A NP LL+ DEP
Sbjct: 126 LR-GPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLIADEP 184

Query: 180 TTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDK 239
           TT LDVT Q QI++L+  L+   GM++L ++HDL ++A+ ADRV VMYAG+ VE  P   
Sbjct: 185 TTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEERPVAD 244

Query: 240 LLSAPAHPYSRGLIASIPTNDGTDRQARSLRGML-RRDEMSTGCKFEPRCDFATGACRAT 298
           L + P HPY+R L+ + PT          + G++    ++  GC F PRC  A  AC   
Sbjct: 245 LFARPLHPYTRALMRARPTPGLRRELLDEIPGIVPSLADLPPGCAFAPRCAHADEACARL 304

Query: 299 PQLLELIEDARSVACM 314
             +LE +    SVAC+
Sbjct: 305 QPVLEGVGGGGSVACL 320



 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 22/147 (14%)

Query: 341 SLLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSGKSTIARAI 400
           +LL V +L++ ++ P       GR +   V  ++ ++AAGE +A+VG SG GKS  A A+
Sbjct: 5   ALLDVKDLTVRFRTPA------GRLT--AVDRLSFDIAAGETLAIVGESGCGKSVTAMAL 56

Query: 401 --SARLPP---RAGIIRLDGTALAPSLKDRSVEELR--QIQYIFQNPDASLNP------R 447
               R PP       +R +GT L  +L +R++ ++R  +I  IFQ+P ++LNP      +
Sbjct: 57  LRLLRSPPAEISGSHVRFEGTELL-ALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQ 115

Query: 448 GLRLFERTQELDDPCLYRNVERREDLV 474
            +   +R   L  P L+R      DLV
Sbjct: 116 IIESLKRHTGLRGPALHRRAVELLDLV 142