Pairwise Alignments

Query, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 338 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  238 bits (608), Expect = 2e-67
 Identities = 142/325 (43%), Positives = 188/325 (57%), Gaps = 17/325 (5%)

Query: 1   MKNLIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTI 60
           M  LI+VR+L+IA+   +     V+ +S  +  GE   LVGESG GKS  A  L+     
Sbjct: 1   MAPLIDVRDLSIAFPRATP----VRGLSLTVEAGETVALVGESGSGKSLTALALMRLLPD 56

Query: 61  NSLVQTGEVLFDG-----TDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICE 115
            + + +GE+LF G     TDL +L+  +L R+RG  IA V Q P TSL+P + VG Q+ E
Sbjct: 57  TARIASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNPVLSVGQQVAE 116

Query: 116 MIATHKALPDGMTMERRIVELFTLVGLPDVGHR---YPHELSGGQQQRVTIAMAVACNPD 172
           ++  H+ L       R  VEL  LV +P+   R   YPHELSGG +QRV IA+AVAC P 
Sbjct: 117 VVRLHEGLSRRAAFARA-VELLDLVRIPEPRRRVGDYPHELSGGMRQRVMIAIAVACTPR 175

Query: 173 LLVLDEPTTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLV 232
           LL+ DEPTT LDVT Q Q++ LL  LR  + M +L +THDL ++A+ ADRV VMYAG+ V
Sbjct: 176 LLIADEPTTALDVTIQAQVLDLLDALRRDLSMGLLLITHDLGVVAEWADRVAVMYAGRKV 235

Query: 233 EVAPCDKLLSAPAHPYSRGLIASIPTNDGTDRQA----RSLRGMLRRDEMSTGCKFEPRC 288
           E AP + L  AP HPY+RGL+A+ P  D     +      ++G +       GC F PRC
Sbjct: 236 EDAPFETLFGAPLHPYTRGLLAASPRLDAGQHYSAGALAEIQGSIASAAGEEGCAFAPRC 295

Query: 289 DFATGACRATPQLLELIEDARSVAC 313
             A   CRA    LE +     VAC
Sbjct: 296 PSARALCRAGAPALEAVAPGHLVAC 320



 Score = 54.3 bits (129), Expect = 8e-12
 Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 22/115 (19%)

Query: 342 LLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSGKSTIARAIS 401
           L+ V +LS+++           R +P  VR ++L + AGE VALVG SGSGKS  A A+ 
Sbjct: 4   LIDVRDLSIAFP----------RATP--VRGLSLTVEAGETVALVGESGSGKSLTALALM 51

Query: 402 ARLPPRAGII--------RLDGTALAPSLKDRSVEEL--RQIQYIFQNPDASLNP 446
             LP  A I         R  G      L+DR++  +  R I  +FQ P  SLNP
Sbjct: 52  RLLPDTARIASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNP 106