Pairwise Alignments

Query, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

Subject, 523 a.a., microcin ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  229 bits (585), Expect = 2e-64
 Identities = 126/261 (48%), Positives = 171/261 (65%), Gaps = 8/261 (3%)

Query: 3   NLIEVRNLNIAYGGPSGWTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTINS 62
           NLIE+R+L++A+ G +    VV+++S ++ PGE   LVGESG GKS  A+ +L       
Sbjct: 2   NLIEIRDLSVAFSGQT----VVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPEAG 57

Query: 63  LVQTGEVLFDGTDLLKLDAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHKA 122
              TG + + G +L+   AA+L +LRGNRIA + Q P TSL+P   +  QI E +  HK 
Sbjct: 58  TETTGSIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKG 117

Query: 123 LPDGMTMERRIVELFTLVGLPDVGHR---YPHELSGGQQQRVTIAMAVACNPDLLVLDEP 179
           L  G   + RI+EL  LVG+     R   YPH+LSGGQ+QRV IAMA+AC P+LL+ DEP
Sbjct: 118 L-GGKAAQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEP 176

Query: 180 TTGLDVTTQRQIIQLLADLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDK 239
           TT LDVT QR+I+ LL  L+ R+GM++L ++HDL L+  IA RV VM AG++VE A C  
Sbjct: 177 TTALDVTVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQT 236

Query: 240 LLSAPAHPYSRGLIASIPTND 260
           L +AP HPYSR L+ + P  D
Sbjct: 237 LFNAPQHPYSRLLLDAEPDAD 257



 Score =  149 bits (377), Expect = 2e-40
 Identities = 90/239 (37%), Positives = 137/239 (57%), Gaps = 12/239 (5%)

Query: 20  WTNVVQDVSFEIAPGEAFGLVGESGCGKSTVAYRLLGYGTINSLVQTGEVLFDGTDLLKL 79
           +   V  +S  +  G+  G+VGESG GKST     LG   +  L  TG + F G  L  L
Sbjct: 289 YLRAVDGISLSVQRGKTLGIVGESGSGKST-----LGQAILRLLDSTGSIRFQGEALDPL 343

Query: 80  DAASLMRLRGNRIAFVPQNPTTSLSPGMRVGSQICEMIATHK--ALPDGMTMERRIVELF 137
           +   +   R  ++  V Q+P  SLSP M V   I E +  H   +L D    + +++++ 
Sbjct: 344 NNQQMRPWR-KQMQVVFQDPYGSLSPRMTVEQIISEGLEVHAPCSLAD---RDAQVIQVL 399

Query: 138 TLVGL-PDVGHRYPHELSGGQQQRVTIAMAVACNPDLLVLDEPTTGLDVTTQRQIIQLLA 196
             VGL P   HRYPHE SGGQ+QR+ IA A+   P L++LDEPT+ LD T Q+Q++ LL 
Sbjct: 400 KDVGLDPASRHRYPHEFSGGQRQRIAIARALVLKPALMLLDEPTSALDRTVQKQVVALLR 459

Query: 197 DLRSRIGMAMLYVTHDLALLAQIADRVGVMYAGQLVEVAPCDKLLSAPAHPYSRGLIAS 255
           +L+ + G+  L+++HDLA++  +A  + V+  GQ+VE      +  AP HPY++ L+A+
Sbjct: 460 ELQDKYGLTYLFISHDLAVVRAMAHDMIVIKDGQVVERGASHAVFDAPQHPYTKELLAA 518



 Score = 62.8 bits (151), Expect = 4e-14
 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%)

Query: 340 ESLLSVTELSLSYQQPG-LFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSGKSTIAR 398
           E++L V +L++ ++  G LF R   +T    V  I+L++  G+ + +VG SGSGKST+ +
Sbjct: 265 ETVLQVDDLTVQFRLGGGLFRR---KTYLRAVDGISLSVQRGKTLGIVGESGSGKSTLGQ 321

Query: 399 AISARLPPRAGIIRLDGTALAPSLKDRSVEELRQIQYIFQNPDASLNPRGL--RLFERTQ 456
           AI  RL    G IR  G AL P    +     +Q+Q +FQ+P  SL+PR    ++     
Sbjct: 322 AI-LRLLDSTGSIRFQGEALDPLNNQQMRPWRKQMQVVFQDPYGSLSPRMTVEQIISEGL 380

Query: 457 ELDDPC 462
           E+  PC
Sbjct: 381 EVHAPC 386



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 19/112 (16%)

Query: 341 SLLSVTELSLSYQQPGLFNRLLGRTSPAVVREINLNLAAGEVVALVGGSGSGKSTIARAI 400
           +L+ + +LS+++          G+T   VVR ++L++  GE +ALVG SGSGKS  A +I
Sbjct: 2   NLIEIRDLSVAFS---------GQT---VVRNLSLDVRPGECLALVGESGSGKSVTAHSI 49

Query: 401 SARLP----PRAGIIRLDGTALAPSLKDRSVEELR--QIQYIFQNPDASLNP 446
              LP       G I+  G  L       ++++LR  +I  IFQ P  SLNP
Sbjct: 50  LQLLPEAGTETTGSIQYRGQELI-GASAATLQKLRGNRIAMIFQEPMTSLNP 100