Pairwise Alignments

Query, 321 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 65/267 (24%), Positives = 127/267 (47%), Gaps = 12/267 (4%)

Query: 8   AGLLLSTATLVLAQ---PLGTAQAQE--KRIVAVSIPAATHGWTGGVVYHAEQAEKEVEA 62
           AG LL+ A L  A    PL +A A +  K  V + + +  + +   +   A+  +KE  A
Sbjct: 6   AGRLLAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAA 65

Query: 63  AFPNVDVVLSTASSATAQVSALEDLSATRKLDALVILPFTSEELTGPVEQIKKNGTFISV 122
            F  +   +   +  +AQ+  +  +    K++A+VI P  S+ L   +++    G  +  
Sbjct: 66  DFDMITNGIKNETDTSAQIDIVNQMILA-KVNAIVIAPADSKALVTVLKKASDAGIKVVN 124

Query: 123 VDRGLTDPTIQDL-----YVAGDNIAVGANTARWLSDKLGGQGEIVVLRGIPTVID-DER 176
           +D  L    ++       +V  DN         +L+ +L    ++ ++ G+PT  +  +R
Sbjct: 125 IDNRLDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQR 184

Query: 177 IKGFSDVIDKTNIKILDIQYANWNQDEAFKLMQDYLAKYPKIDAVWANDDDMLLGVIEAV 236
             G+ D +D   +KI+  Q  NW  D+  K+    L++YP + A+ A +D+M LG + AV
Sbjct: 185 TAGYKDAMDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAV 244

Query: 237 DRAGRKDIKYALGGNGMKQVIEMVKEG 263
             AG+      +G + ++ +  M+++G
Sbjct: 245 RAAGKAGKVLVVGYDNIEAIKPMLQDG 271