Pairwise Alignments

Query, 321 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  266 bits (680), Expect = 5e-76
 Identities = 139/323 (43%), Positives = 202/323 (62%), Gaps = 5/323 (1%)

Query: 1   MKSIIRKAGLLLSTATLVLAQPLGTAQAQEKRIVAVSIPAATHGWTGGVVYHAEQAEKEV 60
           M +  R+  L    A    + P   A A EK  + VSIPAATH + GG+ Y A QA+K++
Sbjct: 1   MTTFTRRLALTAVAAAAFASLP---ALAAEKVNLGVSIPAATHSFMGGINYWANQAKKDL 57

Query: 61  EAAFPNVDVVLSTASSATAQVSALEDLSATRKLDALVILPFTSEELTGPVEQIKKNGTFI 120
           E    ++ + + TA++A  Q + L+DLS   K++ALV+ PF S  LT PV Q+K  G ++
Sbjct: 58  EKEHKDLKITIKTAANAPEQANQLQDLSTVTKINALVVFPFESAALTKPVAQVKAKGAYV 117

Query: 121 SVVDRGLTDPTIQDLYVAGDNIAVGANTARWLSDKLGGQGEIVVLRGIPTVIDDERIKGF 180
           +VVDRGLTD + QD YVAGDN A G   A ++  +L G+G +V LRGI T +D+ER+  F
Sbjct: 118 TVVDRGLTDTSAQDAYVAGDNTAFGKIPAEYIVKQLNGKGNVVALRGIATTLDNERMDAF 177

Query: 181 SDVI-DKTNIKILDIQYANWNQDEAFKLMQDYLAKYPKIDAVWANDDDMLLGVIEAVDRA 239
           + V+    +IK+LD +YANWN+D+AFK+ QDYL ++  IDA+WA DDDM +GV++A+ +A
Sbjct: 178 NAVLKGSPDIKLLDAKYANWNRDDAFKVTQDYLTRFKNIDAIWAADDDMAVGVLKAISQA 237

Query: 240 GRKDIKYALGGNGMKQVIEMVKEGNE-RTPVSTPYPPSMIKSAIYMTAAQFAGQAPMRGS 298
            R DIK   GG G K +++ + +G + R      Y P  I  AI +TA        +  +
Sbjct: 238 KRDDIKIVFGGAGAKDMVKTIMDGKDPRITADVSYSPKFIYDAIKLTAEARLKGEKLPAT 297

Query: 299 FLLGAPLITPENADQFYFPDSPF 321
            ++ + LIT ENA +FY P+SPF
Sbjct: 298 TIIPSVLITKENAKEFYHPNSPF 320