Pairwise Alignments

Query, 331 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 321 a.a., arabinose ABC transporter permease from Pseudomonas simiae WCS417

 Score =  148 bits (373), Expect = 2e-40
 Identities = 99/303 (32%), Positives = 158/303 (52%), Gaps = 17/303 (5%)

Query: 27  ALAVIVLFGALVNPNFVSSANLINVITRSAFIAIIAVGATFVISSGGLDLSVGSMMA--- 83
           AL++ VL  AL   NF+S  N+  +    + + I A    F ++SG  DLSVGS++A   
Sbjct: 29  ALSIFVL-SALFIDNFLSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVIACAG 87

Query: 84  FVTGIMIMAMNHLAPAFGAWAIPMGAGVALLVGALCGLFNGLIVTVGRIEPFIVTLGTMG 143
            V GI+I   +         ++ +G   AL +G + GL NG+++   RI   I TL TM 
Sbjct: 88  VVAGIVIRDTD---------SVVLGVSAALAMGLVVGLINGIVIAKLRINALIATLATMQ 138

Query: 144 IFRAFITFMTDGGSLPIDRSLREAYRPVYFGSFFGIPYPVLITFVVVMAGAFLLYKTKYG 203
           I R      ++G ++ +   + E +     G   G+P P++IT +  +   +LL  T YG
Sbjct: 139 IVRGLAYIFSNGKAVGV---MDEGFFVFGNGQLLGVPVPIIITVLCFVFFGWLLNYTTYG 195

Query: 204 RRLKSAGSNVEVARFSGVNVAGVRTGAYVIQGFCVAVAAICYVPRLGAATPTTGQLWELQ 263
           R   + G N E A  +GVNV   +   + + G   A+A +    R+ +  P  GQ +EL 
Sbjct: 196 RNTMAIGGNQEAALLAGVNVDRTKIIIFAVHGLIGALAGVILASRMTSGQPMIGQGFELT 255

Query: 264 VITAVVIGGTLLRGGRGRIGGTVAGALILEVIANVMVLSDLVSEYLVAAVQGAIIIIAML 323
           VI+A V+GG  L GG G I   +AG LIL +I N M L ++ + Y    ++G+I+++A++
Sbjct: 256 VISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQY-VIRGSILLLAVI 314

Query: 324 AHR 326
             R
Sbjct: 315 IDR 317