Pairwise Alignments

Query, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  153 bits (387), Expect = 5e-42
 Identities = 104/325 (32%), Positives = 170/325 (52%), Gaps = 9/325 (2%)

Query: 6   LATTAIAFGL-SAAAPAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSGGKLKLT 64
           LA  A A G+ S  A A A +     ++S  +    P G   K     + +++ G++ + 
Sbjct: 10  LAAAATALGMFSTGAMAQAAYKPE-YKMSLVLGPPTPWGQAGKIWADMVKERTQGRINIK 68

Query: 65  AFWGGAL--GGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEAYTVL 122
            + G +L  G   +   ALR GV +  V S+      +  L +F +PFL  +      + 
Sbjct: 69  LYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLFSMPFLMPDYAAIDALT 128

Query: 123 DGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIFLDTF 182
            G+ G  M + LE AG+V LA+ ENGFR ++NS +P+    D +GMK+RV+ + I+ D F
Sbjct: 129 QGEVGKEMFKTLEKAGVVPLAWGENGFREITNSKKPIKSPADIKGMKIRVVGSPIYSDMF 188

Query: 183 QNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEV-QKYVTETNHAYTPFLFL 241
             LGAN T M++ +   AL + A+D QENP       K   V QK+VT   +   P +F+
Sbjct: 189 TALGANPTQMSWADAQPALASGAVDGQENPLFLFTVLKMQTVGQKFVTTWGYVADPLVFV 248

Query: 242 FSKPIFDSYTPEEQAALRECAVVGRDEE----RKVIQDLNKKSLEKIKEAGLEVNTLSAE 297
            +K I+ S+TP +QA +R+ A+    EE    RK + + +K  L+ I   G+ V +L+  
Sbjct: 249 VNKEIWASWTPADQAIVRQAAIDAGKEEIVLARKGLVETDKPVLKDIAGMGVTVTSLTPA 308

Query: 298 EQARIREKSMVVYEKHKAEIGAEVV 322
           E+    + +  VY+K K+ +G ++V
Sbjct: 309 EREEFVKATRPVYDKWKSTVGTDLV 333