Pairwise Alignments

Query, 334 a.a., TRAP-type periplasmic solute-binding protein from Sinorhizobium meliloti 1021

Subject, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  137 bits (346), Expect = 3e-37
 Identities = 85/264 (32%), Positives = 136/264 (51%), Gaps = 9/264 (3%)

Query: 1   MRKL--LLATTAIAFGLSAAAPAFAEFNDRNIRVSNGINEDHPVGNGIKAMQACLDQKSG 58
           M+KL  L+A   IA   S    A      R  R +    +D P    +K M   L + +G
Sbjct: 6   MKKLSGLIAIGLIALTASNVTTA------RTFRSAEVHAKDFPTNQAVKFMGDELSKATG 59

Query: 59  GKLKLTAFWGGALGGDLQATQALRSGVQEAVVTSSSPLVGIIPALGVFDLPFLFANAQEA 118
           GK  +  F   +LG +    + ++ G  + V  SS+   GI+P   +  LPFLF + +  
Sbjct: 60  GKDNIKIFADSSLGSEKDTVEQVKIGALDMVRVSSASFHGIVPESVIPSLPFLFRDIEHF 119

Query: 119 YTVLDGDFGDMMNEKLEAAGLVNLAYWENGFRNLSNSVRPVTKWEDFEGMKVRVMQNNIF 178
              + G  GD +    E AG + L  +E+G R++  + +P+    D +G+K+RV  +++ 
Sbjct: 120 RKAMYGPTGDKVLAAFEKAGFIGLCMYESGARSVY-AKKPIKSVADMKGLKIRVQPSDLM 178

Query: 179 LDTFQNLGANATPMAFGEVFSALETKAIDAQENPYVTIDTSKFFEVQKYVTETNHAYTPF 238
           +      GA+ TPM   EV++ L+T  +DA EN Y + + +K FE     +ET H  TP 
Sbjct: 179 VSLVSAAGASPTPMPIAEVYTGLKTGLVDAAENNYPSYEEAKHFEAAPVYSETMHVMTPE 238

Query: 239 LFLFSKPIFDSYTPEEQAALRECA 262
           + +FSK I+D+ T EEQAA+R+ A
Sbjct: 239 VLVFSKKIWDTLTKEEQAAIRKAA 262