Pairwise Alignments

Query, 316 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 66.6 bits (161), Expect = 7e-16
 Identities = 74/282 (26%), Positives = 120/282 (42%), Gaps = 13/282 (4%)

Query: 6   LRTAALAAGLATLLTSTALAADVKATMIIYLDPSV--QFFNPVVKGAQDAAAQFGVDLDV 63
           L  A LAA  A L  S+A A D     +  +  S+  +FF  +  GA+    +   D D+
Sbjct: 10  LAVAVLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDM 69

Query: 64  QYAN----NDPVRQNDLIESATASGVDGIAVAISSSDAFDESICAAVKAGIIVIGFNND- 118
                    D   Q D++     + V+ I +A + S A    +  A  AGI V+  +N  
Sbjct: 70  ITNGIKNETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRL 129

Query: 119 DLDGAKG-NCRQAYVGMDELASGYELGNRMIKEFGLKSGDVVFNPREIPEASFAVARGGG 177
           D D  K  N    +VG D       +G+ + K+  L SGD V     +P  + A  R  G
Sbjct: 130 DPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQ--LASGDKVGIIEGVPTTTNAQQRTAG 187

Query: 178 IEKAMTENGIKVETVRAG-LDPAEAQNIIAQFLIANPNVKALFGTGSVTSTVGAGAIKDA 236
            + AM   G+K+ + ++G  +  + Q + +  L   P++KAL       +     A++ A
Sbjct: 188 YKDAMDAAGMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAA 247

Query: 237 GV--DIPFGGFDLAVEIVNAVESGAMYATMDQQPYLQGYYPI 276
           G    +   G+D    I   ++ G + AT DQ    Q  + I
Sbjct: 248 GKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGI 289