Pairwise Alignments

Query, 316 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score = 67.0 bits (162), Expect = 6e-16
 Identities = 77/300 (25%), Positives = 131/300 (43%), Gaps = 15/300 (5%)

Query: 5   RLRTAALAAGLATLLT-STALAADVKATMIIYLDPSVQFFNPVVKGAQDA----AAQFGV 59
           RL   A+ + L+  L  S A A D     ++    + +FF  +  GA+D     A +F +
Sbjct: 8   RLLALAVISSLSLALPLSAAHAEDKPKVALVMKSLANEFFRTMEDGAKDYQKTHADEFEL 67

Query: 60  DLDVQYANNDPVRQNDLIESATASGVDGIAVAISSSDAFDESICAAVKAGIIVIGFNN-- 117
             +      D   Q  ++E    +G   + +A + S A   ++  A+  G++VI  +N  
Sbjct: 68  IANGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQGVVVINIDNRL 127

Query: 118 -DDLDGAKGNCRQAYVGMDELASGYELGNRMIKEFGLKSGDVVFNPREIPEASFAVARGG 176
             DL  +KG     +VG D       +G+ +  +  LK+GD V     +   + A  R  
Sbjct: 128 DPDLLKSKG-ISVPFVGPDNRKGARLVGDYLASQ-KLKAGDQVGIIEGVSTTTNAQQRTA 185

Query: 177 GIEKAMTENGIKVETVRAGLDPAEAQNIIAQFLIAN-PNVKALFGTGSVTSTVGAGAIKD 235
           G + AM    +K+ +V++G    +  N +A  ++   P++KAL       +     A++ 
Sbjct: 186 GFKDAMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEYPDLKALLAGNDSMALGAVSAVRA 245

Query: 236 AGV--DIPFGGFDLAVEIVNAVESGAMYATMDQQPYLQGYYPIAQIALAKKYGLTPTDID 293
           AG    +   G+D    I   +E G + AT+DQ    Q  Y I Q AL    G  P D+D
Sbjct: 246 AGKTGQVQVVGYDNINAIKPMLEDGRVLATLDQAASQQAVYGI-QAALKMVKGEKP-DVD 303