Pairwise Alignments

Query, 359 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 325 a.a., D-ribose ABC transporter, permease component RbsC (from data) from Pseudomonas simiae WCS417

 Score =  147 bits (372), Expect = 3e-40
 Identities = 95/276 (34%), Positives = 142/276 (51%), Gaps = 3/276 (1%)

Query: 76  YLSPQNLTILMKAIPVLGCLALGAGVLMIAGEFDLSIGSVYTFTA-VLMASLVNAGLSAF 134
           +LS    + L   IP L  LA+G   ++I G  DLS+GSV    A  +  +++  G S  
Sbjct: 41  FLSYDTFSTLANQIPDLMVLAVGMTFILIIGGIDLSVGSVLALAASAVSVAILGWGWSVL 100

Query: 135 IAAPIAILTGLLIGSLNGHITLRFGLPSFIVTLGGLLFWRGAVLLYNGAVQVRFDPEPVF 194
            AA + +    L G++ G IT+ + +PSFIV+LG L   RG      G+          F
Sbjct: 101 PAAVLGMGCAALAGTITGSITVAWRIPSFIVSLGVLEMARGVAYQMTGSRTAYIGDS--F 158

Query: 195 TSLFSGTLFGVNAAFIWIVLFVTGFHLLLHRHRFGNHVFATGGNRGAAEAIGINTSRVKL 254
             L +   FG++ +FI  +L +    L+L R  FG ++   G N  A    GIN    K+
Sbjct: 159 AWLSNPIAFGISPSFIIALLVIIAAQLVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKI 218

Query: 255 IAFAIAGGMAAVAGILATARVGSVQPGQGAGLELQAIAACVIGGLSLRGGRGSIIGIFLG 314
           + F++ G +A VA +   +R+ +  P  G+GLELQ IAA VIGG SL GGRGS+I  F G
Sbjct: 219 LVFSLMGLLAGVAALFQISRLEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFG 278

Query: 315 VLLIHTITDVLLLLRAPGFYLDMFIATLIVLAAIFN 350
           VL+I  +   L  + A      +    +IV+A + +
Sbjct: 279 VLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLD 314