Pairwise Alignments

Query, 359 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 342 a.a., ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  159 bits (402), Expect = 1e-43
 Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 4/303 (1%)

Query: 55  VFMTLQIVCIAGALLYPDEFRYLSPQNLTILMKAIPVLGCLALGAGVLMIAGEFDLSIGS 114
           + + +  +C+  +   P    +L+  N+  ++ +  + G + +G  +L+I G  DLS+GS
Sbjct: 39  LLLIIAALCVGMSFASP---YFLTWDNVRAMLLSFSIEGIVVVGMTILLIVGGIDLSVGS 95

Query: 115 VYTFTAVLMASLVNAGLSAFIAAPIAILTGLLIGSLNGHITLRFGLPSFIVTLGGLLFWR 174
           V  F  V+   L   G   + A  +AI    LIG++ G    R GL  FI +L  ++  R
Sbjct: 96  VVCFAMVVTGKLFLMGFDPWTAGLVAIGASALIGAMIGGCVTRIGLNHFIASLAFMVIVR 155

Query: 175 GAVL-LYNGAVQVRFDPEPVFTSLFSGTLFGVNAAFIWIVLFVTGFHLLLHRHRFGNHVF 233
           G  L L  G  Q  F     F  +  GTLFG+ A  +  +L V     +L R      VF
Sbjct: 156 GLCLALTQGTPQSLFSLPAEFKFIGQGTLFGIPAVILIFLLIVVVSDFVLRRSTLLRRVF 215

Query: 234 ATGGNRGAAEAIGINTSRVKLIAFAIAGGMAAVAGILATARVGSVQPGQGAGLELQAIAA 293
            TG N  AA   GI    VK     +    A +AG++ TAR G+  P  G G+EL  IAA
Sbjct: 216 YTGSNEKAALYSGIRVGHVKFWVTVLCSASAGLAGVIYTARFGAATPTFGMGMELNVIAA 275

Query: 294 CVIGGLSLRGGRGSIIGIFLGVLLIHTITDVLLLLRAPGFYLDMFIATLIVLAAIFNHLI 353
            VIGG SL+GG G+++G  LG+ L+  +T  L+LL    ++ D+    +++ A   +H++
Sbjct: 276 AVIGGASLKGGSGTVLGAVLGLALLSVVTSSLILLDVSPYWQDVIKGLILLAAVTIDHIM 335

Query: 354 ERR 356
             R
Sbjct: 336 NTR 338