Pairwise Alignments

Query, 359 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

Subject, 329 a.a., Ribose ABC transporter, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score =  161 bits (408), Expect = 2e-44
 Identities = 112/331 (33%), Positives = 181/331 (54%), Gaps = 12/331 (3%)

Query: 28  SAAPRSRTQRQSILKQIMGMPAGAIFLVFMTLQIVCIAGALLYPDEFRYLSPQNLTILMK 87
           +AA  + +   S LK  +G   G   L  + + ++ + G+L    E+ +L+ +    +  
Sbjct: 3   AAATPTTSASPSALKGQLGTYLG---LTVVLVGMIALFGSL---SEY-FLTRETFVSIAN 55

Query: 88  AIPVLGCLALGAGVLMIAGEFDLSIGSVYTFTA-VLMASLVNAGLSAFIAAPIAILTGLL 146
            IP L  +A+G   ++I    DLS+GSV   +A V  A+++   LS  +AA + + TGL+
Sbjct: 56  EIPALAVMAVGMTFVLIIAGIDLSVGSVLALSAAVTAAAILEWKLSVPLAAVLGLATGLI 115

Query: 147 IGSLNGHITLRFGLPSFIVTLGGLLFWRG-AVLLYNGAVQVRFDPEPVFTSLFSGTLFGV 205
            G++ G +++ + LPSFIV+LG L   RG A L+ +   Q   D     + L +  + G+
Sbjct: 116 CGTVTGAVSVAWRLPSFIVSLGMLEAVRGGAYLVTDSRTQYVGD---AISGLAAPWIGGI 172

Query: 206 NAAFIWIVLFVTGFHLLLHRHRFGNHVFATGGNRGAAEAIGINTSRVKLIAFAIAGGMAA 265
           +AAF+  V+ V    ++L R  FG HV   G N  A    G++   V++I FA+ G +A 
Sbjct: 173 SAAFVLAVVLVVIGQMVLTRTVFGRHVVGIGTNEEAMRLAGVDPRPVRIIVFAVTGLLAG 232

Query: 266 VAGILATARVGSVQPGQGAGLELQAIAACVIGGLSLRGGRGSIIGIFLGVLLIHTITDVL 325
           +AG++ +AR+ +  P  G G+ELQ IAA VIGG SL GGRGS++  F GVL+I  +   L
Sbjct: 233 LAGLMQSARLEAADPNAGVGIELQVIAAVVIGGTSLMGGRGSVVNTFFGVLIIAVLEAGL 292

Query: 326 LLLRAPGFYLDMFIATLIVLAAIFNHLIERR 356
             + A      +    +IV+A I + L +RR
Sbjct: 293 AQVGASEPSKRIITGAVIVVAVIIDTLRQRR 323